SRR1545713_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545713_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	341731
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1009	0.2952614775949504	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	984	0.28794578191618553	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	920	0.26921760097854747	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTTAGGC	45	3.8380676E-10	45.000004	4
ATAAGGT	45	3.8380676E-10	45.000004	4
TATAGAG	45	3.8380676E-10	45.000004	2
GTTGGTA	30	2.1610085E-6	45.000004	27
TGCACGG	30	2.1610085E-6	45.000004	2
TCACGAG	20	7.026321E-4	45.0	2
CTAGAGC	20	7.026321E-4	45.0	40
TGATATC	20	7.026321E-4	45.0	5
GTACCTT	25	3.8850332E-5	45.0	32
TCACCAC	25	3.8850332E-5	45.0	11
GATCCAT	25	3.8850332E-5	45.0	9
GATTTCG	20	7.026321E-4	45.0	11
AAGGTCC	40	6.7902874E-9	45.0	6
CAATTAG	40	6.7902874E-9	45.0	2
TACGGGA	25	3.8850332E-5	45.0	4
AGGCGAT	280	0.0	45.0	7
GTAGCCG	25	3.8850332E-5	45.0	43
ATTCAGC	20	7.026321E-4	45.0	41
CGAGGTT	20	7.026321E-4	45.0	5
GTGTAAG	85	0.0	45.0	2