SRR1545708_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545708_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1128518
Sequences flagged as poor quality	0
Sequence length	50
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6566	0.5818250129816271	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2919	0.25865781493959333	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2781	0.2464293879229219	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA	1234	0.10934694883023577	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTACA	25	4.4427892E-5	44.0	34
CGTTTTA	3745	0.0	43.530037	1
CGTTATT	2040	0.0	41.519608	1
CGTTCGA	85	0.0	41.411762	14
TTACGGG	310	0.0	40.45161	3
GTTTTAT	4340	0.0	40.35023	2
CGAAATT	50	1.3478711E-9	39.6	37
CGGTCTA	250	0.0	39.6	31
ACGGTCT	250	0.0	39.6	30
TTGCGTA	45	2.3508619E-8	39.11111	1
TCGAATA	45	2.3508619E-8	39.11111	1
GTTATTT	2285	0.0	38.897156	2
TACGGGA	215	0.0	38.88372	4
AGGCGAT	860	0.0	38.627907	7
GCGAATA	40	4.1244493E-7	38.500004	1
TCGCTAA	40	4.1244493E-7	38.500004	12
GCGTAAA	40	4.1244493E-7	38.500004	1
ACGGGAT	235	0.0	38.382977	5
AGTACGG	115	0.0	38.260868	2
TATACGG	75	0.0	38.13333	2