FastQCFastQC Report
Thu 26 May 2016
SRR1545708_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1545708_1.fastq.gz
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences1128518
Sequences flagged as poor quality0
Sequence length50
%GC46

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT65660.5818250129816271No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT29190.25865781493959333No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT27810.2464293879229219No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA12340.10934694883023577No Hit

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGTACA254.4427892E-544.034
CGTTTTA37450.043.5300371
CGTTATT20400.041.5196081
CGTTCGA850.041.41176214
TTACGGG3100.040.451613
GTTTTAT43400.040.350232
CGAAATT501.3478711E-939.637
CGGTCTA2500.039.631
ACGGTCT2500.039.630
TTGCGTA452.3508619E-839.111111
TCGAATA452.3508619E-839.111111
GTTATTT22850.038.8971562
TACGGGA2150.038.883724
AGGCGAT8600.038.6279077
GCGAATA404.1244493E-738.5000041
TCGCTAA404.1244493E-738.50000412
GCGTAAA404.1244493E-738.5000041
ACGGGAT2350.038.3829775
AGTACGG1150.038.2608682
TATACGG750.038.133332