##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545708_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1128518 Sequences flagged as poor quality 0 Sequence length 50 %GC 46 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.498895010979002 31.0 31.0 33.0 30.0 34.0 2 31.706409645216116 31.0 31.0 34.0 30.0 34.0 3 31.74052695659263 31.0 31.0 34.0 30.0 34.0 4 35.67734231975033 37.0 35.0 37.0 35.0 37.0 5 27.128705080468368 35.0 25.0 37.0 0.0 37.0 6 31.355189726703518 35.0 26.0 37.0 17.0 37.0 7 14.952821310781042 0.0 0.0 32.0 0.0 37.0 8 25.053867993244236 17.0 17.0 35.0 17.0 37.0 9 33.121214725861705 32.0 32.0 37.0 28.0 39.0 10 35.98228650318382 37.0 35.0 39.0 32.0 39.0 11 36.98195775344301 38.0 37.0 39.0 34.0 39.0 12 37.12946271127266 39.0 37.0 39.0 34.0 39.0 13 36.80265799925212 39.0 35.0 39.0 33.0 39.0 14 38.16362610077996 40.0 37.0 41.0 33.0 41.0 15 38.38401957257217 40.0 37.0 41.0 34.0 41.0 16 38.39526086424851 40.0 37.0 41.0 34.0 41.0 17 38.408431234592626 40.0 37.0 41.0 34.0 41.0 18 38.377665221113 40.0 37.0 41.0 34.0 41.0 19 38.30298674899293 40.0 37.0 41.0 34.0 41.0 20 38.321103429453494 40.0 37.0 41.0 34.0 41.0 21 38.20800908802518 40.0 37.0 41.0 34.0 41.0 22 38.09841934289041 40.0 36.0 41.0 34.0 41.0 23 37.9809023870244 40.0 36.0 41.0 34.0 41.0 24 37.813725611820104 40.0 35.0 41.0 33.0 41.0 25 37.62682828275668 39.0 35.0 41.0 33.0 41.0 26 37.384955313074315 39.0 35.0 41.0 33.0 41.0 27 37.196612725716385 39.0 35.0 40.0 33.0 41.0 28 37.1950682222171 39.0 35.0 40.0 33.0 41.0 29 37.0793704663993 39.0 35.0 40.0 32.0 41.0 30 36.85564962189349 39.0 35.0 40.0 32.0 41.0 31 36.670925940038174 39.0 35.0 40.0 31.0 41.0 32 36.41926136756348 38.0 35.0 40.0 31.0 41.0 33 36.156678050327955 38.0 35.0 40.0 30.0 41.0 34 35.86541021055933 38.0 35.0 40.0 29.0 41.0 35 35.63274577809127 38.0 35.0 40.0 28.0 41.0 36 35.4077817101721 38.0 35.0 40.0 27.0 41.0 37 35.31258695031892 38.0 35.0 40.0 26.0 41.0 38 35.11773405475145 38.0 34.0 40.0 26.0 41.0 39 35.017355505184675 38.0 34.0 40.0 25.0 41.0 40 34.773786505842175 38.0 34.0 40.0 24.0 41.0 41 34.54734262103042 38.0 34.0 40.0 23.0 41.0 42 34.52149987860185 38.0 34.0 40.0 23.0 41.0 43 34.39451209462322 37.0 34.0 40.0 23.0 40.0 44 34.16733627642625 37.0 33.0 40.0 23.0 40.0 45 33.939996526417836 37.0 33.0 40.0 23.0 40.0 46 33.887269853028485 36.0 33.0 39.0 23.0 40.0 47 33.73075484839409 36.0 33.0 39.0 23.0 40.0 48 33.62824872974999 36.0 33.0 39.0 23.0 40.0 49 33.456219572926614 36.0 33.0 39.0 22.0 40.0 50 33.57069625827856 36.0 33.0 39.0 22.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 2.0 13 3.0 14 12.0 15 18.0 16 64.0 17 184.0 18 429.0 19 892.0 20 1608.0 21 2731.0 22 4498.0 23 7008.0 24 10799.0 25 15759.0 26 19944.0 27 21437.0 28 21386.0 29 22714.0 30 26943.0 31 34900.0 32 47744.0 33 79056.0 34 88939.0 35 115751.0 36 164134.0 37 285365.0 38 123529.0 39 32668.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 35.033380061283914 22.608943765185845 25.29600768441443 17.061668489115814 2 36.78541237268701 22.671149241748914 28.10943201614861 12.434006369415464 3 30.55086405356405 23.481149613918433 33.36836452763713 12.599621804880384 4 26.435112244554364 26.50591306474509 31.96112069103018 15.097853999670363 5 17.514031676942682 47.37842019356359 23.870155371912542 11.237392757581182 6 20.16520782123103 40.31818721544539 29.387922921920605 10.128682041402973 7 38.18317474776654 55.80805977396904 4.948259575833084 1.0605059024313304 8 84.65119741111793 3.3299424555035895 10.147290517297908 1.8715696160805588 9 80.22565878435258 4.913789589532466 11.679033918820966 3.1815177072939913 10 42.94313426990088 25.961393615343308 17.929000689399725 13.166471425356086 11 35.49788306433748 22.592727807620257 25.40517740966471 16.504211718377555 12 31.696791721532136 21.518132630582766 30.29442153337386 16.490654114511244 13 23.07619373372866 29.249245470608354 29.927214275713816 17.747346519949172 14 19.035761946198466 31.78682130014763 31.870470829884855 17.30694592376905 15 17.744954001619824 22.514394985281584 41.09194536551477 18.64870564758382 16 19.90114468710291 19.315952426102196 39.56445532991055 21.21844755688434 17 20.377964728963118 19.5907375868174 31.61207885031519 28.419218833904285 18 22.975264904946133 22.293042733921833 33.966671333554274 20.765021027577763 19 27.100941234433122 23.97516034303396 28.0095665288458 20.91433189368712 20 28.775349617817348 22.97880937654517 27.726097412712956 20.519743592924524 21 24.66039531491744 24.2913272096679 30.13217334592802 20.916104129486637 22 23.61575092289179 22.44323971793095 28.844644037578487 25.096365321598768 23 21.98901568251459 26.120629001929963 28.543009504500596 23.347345811054854 24 21.60895971530804 23.729262625850893 35.14494230486355 19.51683535397752 25 22.045106945569323 24.07821585477591 32.37830499823662 21.498372201418142 26 20.6076464885806 27.07976301662889 29.216104661157377 23.09648583363314 27 20.596924461993517 26.086867909949152 31.374776476759784 21.941431151297543 28 19.862244111303497 25.160520257541307 34.56090199713252 20.416333634022674 29 20.149169087245397 24.480779216636332 34.079828589353475 21.290223106764802 30 21.572097210678077 25.303539686562377 32.69819356004955 20.426169542709996 31 26.98893593190361 24.628672294106075 27.585470502021238 20.79692127196908 32 26.432896949804967 24.83735305949927 28.02480775672165 20.704942233974112 33 25.739243857873777 25.255069037445573 27.706602818918263 21.29908428576239 34 21.38999998227764 26.394616656535387 29.471395228077885 22.743988133109085 35 22.0580442669058 25.4493060810727 30.123312166930432 22.369337485091066 36 27.013835844886835 26.239900471237497 26.581321698014566 20.164941985861105 37 22.08409613315871 29.463951837719915 27.176615703072528 21.275336326048855 38 22.489317848718407 29.227978641014147 26.51902760966152 21.76367590060593 39 22.63641342007837 27.922106692139604 26.060638820116296 23.380841067665735 40 24.208918244990333 24.98533474875899 27.78475841767699 23.020988588573687 41 21.1212404232808 24.68059880303194 28.206196090802273 25.991964682884987 42 22.937339058836457 26.878880088753572 25.316033948948974 24.867746903461 43 22.51342025559185 26.007914805080645 27.033153215101574 24.44551172422593 44 22.45573398031755 26.430149984315715 28.488779089035354 22.625336946331384 45 20.87082350480896 29.532360139581293 26.625893428372432 22.970922927237314 46 22.690821059123557 27.677538151806175 28.298884023117044 21.332756765953224 47 22.32130989492414 27.436159635911878 27.816658662068306 22.425871807095675 48 22.645451822655907 25.96954590002109 28.900026406313412 22.484975871009592 49 22.12795896919677 25.22511825243372 30.176213405546036 22.47070937282347 50 21.22642261798217 28.14656035614851 28.897368052614137 21.729648973255188 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 597.0 1 1218.0 2 1839.0 3 11372.5 4 20906.0 5 14841.5 6 8777.0 7 8630.5 8 8484.0 9 8556.0 10 8628.0 11 8482.5 12 8337.0 13 7808.0 14 7279.0 15 6919.5 16 6560.0 17 6284.5 18 6009.0 19 5878.0 20 5747.0 21 5982.0 22 6217.0 23 6653.5 24 7090.0 25 8354.5 26 9619.0 27 10773.0 28 11927.0 29 13830.0 30 15733.0 31 18260.0 32 20787.0 33 23938.5 34 27090.0 35 29989.5 36 32889.0 37 36469.0 38 40049.0 39 47112.5 40 54176.0 41 62669.5 42 71163.0 43 74545.0 44 77927.0 45 79588.0 46 81249.0 47 82023.0 48 82797.0 49 80707.5 50 78618.0 51 74340.0 52 70062.0 53 66141.0 54 62220.0 55 60630.5 56 59041.0 57 57123.0 58 55205.0 59 51538.5 60 47872.0 61 43085.5 62 38299.0 63 33816.0 64 29333.0 65 25344.5 66 21356.0 67 18666.0 68 15976.0 69 13710.0 70 11444.0 71 9648.5 72 7853.0 73 6320.0 74 4787.0 75 3607.5 76 2428.0 77 1768.5 78 1109.0 79 837.5 80 566.0 81 413.0 82 260.0 83 189.0 84 118.0 85 85.5 86 53.0 87 38.0 88 23.0 89 18.0 90 13.0 91 9.0 92 5.0 93 3.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1128518.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.160646923729956 #Duplication Level Percentage of deduplicated Percentage of total 1 67.14624828239268 21.594667832631398 2 8.683382901498133 5.585264231972705 3 4.829676513792361 4.659765633477213 4 3.4564442233115416 4.44645929109954 5 2.4533311906944184 3.94503591054486 6 1.9775292506252058 3.815917200642332 7 1.6114900355841975 3.627859343887268 8 1.3404483687788042 3.4487749366227907 9 1.048038049584734 3.033502350779629 >10 7.349653922820274 41.372669377853605 >50 0.07917503062824854 1.6228649461982598 >100 0.022666731825751397 1.354870044057869 >500 6.384994878816926E-4 0.10626633035710802 >1k 9.57749231822539E-4 0.7119330770011468 >5k 3.192497439408463E-4 0.6741494928741751 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6566 0.5818250129816271 No Hit CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2919 0.25865781493959333 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2781 0.2464293879229219 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 1234 0.10934694883023577 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0057597663484321915 0.0 2 0.0 0.0 0.0 0.016747628305441294 0.0 3 0.0 0.0 0.0 0.025431583723077522 0.0 4 0.0 0.0 0.0 0.03411553914071375 0.0 5 0.0 0.0 0.0 0.0554709805249008 0.0 6 0.0 0.0 0.0 0.11457504443881267 0.0 7 0.0 0.0 0.0 0.1584378804768732 0.0 8 0.0 0.0 0.0 0.388739922624185 0.0 9 0.0 0.0 0.0 0.5101380748911404 0.0 10 0.0 0.0 0.0 0.6938303155111394 0.0 11 0.0 0.0 0.0 0.8278113419546698 0.0 12 0.0 0.0 0.0 0.9539059190903468 0.0 13 0.0 0.0 0.0 1.0075160520257542 0.0 14 0.0 0.0 0.0 1.037023778087722 0.0 15 0.0 0.0 0.0 1.0652909390900278 0.0 16 0.0 0.0 0.0 1.123420273314205 0.0 17 0.0 0.0 0.0 1.1891702214763078 0.0 18 0.0 0.0 0.0 1.2903648856287626 0.0 19 0.0 0.0 0.0 1.333607439136992 0.0 20 0.0 0.0 0.0 1.382432535413702 0.0 21 0.0 0.0 0.0 1.440650481427855 0.0 22 0.0 0.0 0.0 1.5044509702104885 0.0 23 0.0 0.0 0.0 1.5834040750789975 0.0 24 0.0 0.0 0.0 1.6432170333127163 0.0 25 0.0 0.0 0.0 1.6934599182290402 0.0 26 0.0 0.0 0.0 1.7492853459138444 0.0 27 0.0 0.0 0.0 1.8090096923575876 0.0 28 0.0 0.0 0.0 1.8649237318323677 0.0 29 0.0 0.0 0.0 1.9278381027152425 0.0 30 0.0 0.0 0.0 2.0133484800419668 0.0 31 0.0 0.0 0.0 2.0859215360322123 0.0 32 0.0 0.0 0.0 2.157608474122699 0.0 33 0.0 0.0 0.0 2.2294726357931376 0.0 34 0.0 0.0 0.0 2.30727378739196 0.0 35 0.0 0.0 0.0 2.394467788728226 0.0 36 0.0 0.0 0.0 2.471116987057362 0.0 37 0.0 0.0 0.0 2.5540576224747853 0.0 38 0.0 0.0 0.0 2.6477202844792904 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGTACA 25 4.4427892E-5 44.0 34 CGTTTTA 3745 0.0 43.530037 1 CGTTATT 2040 0.0 41.519608 1 CGTTCGA 85 0.0 41.411762 14 TTACGGG 310 0.0 40.45161 3 GTTTTAT 4340 0.0 40.35023 2 CGAAATT 50 1.3478711E-9 39.6 37 CGGTCTA 250 0.0 39.6 31 ACGGTCT 250 0.0 39.6 30 TTGCGTA 45 2.3508619E-8 39.11111 1 TCGAATA 45 2.3508619E-8 39.11111 1 GTTATTT 2285 0.0 38.897156 2 TACGGGA 215 0.0 38.88372 4 AGGCGAT 860 0.0 38.627907 7 GCGAATA 40 4.1244493E-7 38.500004 1 TCGCTAA 40 4.1244493E-7 38.500004 12 GCGTAAA 40 4.1244493E-7 38.500004 1 ACGGGAT 235 0.0 38.382977 5 AGTACGG 115 0.0 38.260868 2 TATACGG 75 0.0 38.13333 2 >>END_MODULE