##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545707_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 429214 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.966771820117703 31.0 31.0 33.0 30.0 33.0 2 31.161094465697765 31.0 31.0 33.0 30.0 34.0 3 31.07513734407545 31.0 31.0 34.0 28.0 34.0 4 35.068795519251466 35.0 35.0 37.0 32.0 37.0 5 32.82246152269031 35.0 35.0 37.0 28.0 37.0 6 34.00893493688463 35.0 35.0 37.0 28.0 37.0 7 15.43155162692736 0.0 0.0 35.0 0.0 37.0 8 24.94677713215319 17.0 17.0 35.0 17.0 37.0 9 32.60486843392806 32.0 32.0 37.0 27.0 39.0 10 35.40772435195497 37.0 34.0 37.0 32.0 39.0 11 36.39382219592092 37.0 35.0 39.0 32.0 39.0 12 36.409704716062386 37.0 35.0 39.0 32.0 39.0 13 36.29457566621778 38.0 35.0 39.0 32.0 39.0 14 37.386261864710846 39.0 36.0 40.0 32.0 41.0 15 37.6339564879058 39.0 36.0 41.0 33.0 41.0 16 37.59480585442227 39.0 36.0 41.0 32.0 41.0 17 37.54189751499252 39.0 36.0 41.0 32.0 41.0 18 37.46349140521978 39.0 36.0 40.0 32.0 41.0 19 37.380134385178486 39.0 36.0 40.0 32.0 41.0 20 37.47933431807909 39.0 36.0 41.0 32.0 41.0 21 37.36882767104521 39.0 35.0 41.0 32.0 41.0 22 37.40597464202006 39.0 35.0 41.0 32.0 41.0 23 37.34961114968291 39.0 35.0 41.0 32.0 41.0 24 37.158210123621316 39.0 35.0 41.0 32.0 41.0 25 36.891795235010974 39.0 35.0 40.0 31.0 41.0 26 36.789517583303436 39.0 35.0 40.0 31.0 41.0 27 36.723287218031096 39.0 35.0 40.0 31.0 41.0 28 36.5875018056261 38.0 35.0 40.0 31.0 41.0 29 36.52092895385519 38.0 35.0 40.0 31.0 41.0 30 36.222860857287976 38.0 35.0 40.0 30.0 41.0 31 36.08062178773292 38.0 35.0 40.0 30.0 41.0 32 35.9609495496419 38.0 35.0 40.0 29.0 41.0 33 35.73163503520389 38.0 35.0 40.0 28.0 41.0 34 35.52186787942611 38.0 34.0 40.0 27.0 41.0 35 35.306283112852796 38.0 34.0 40.0 25.0 41.0 36 35.09114567558374 38.0 34.0 40.0 24.0 41.0 37 34.96031117344728 38.0 34.0 40.0 24.0 41.0 38 34.82849813845774 38.0 34.0 40.0 24.0 41.0 39 34.70153350077118 38.0 34.0 40.0 23.0 41.0 40 34.525481461462114 38.0 33.0 40.0 23.0 41.0 41 34.34332524102196 38.0 33.0 40.0 23.0 41.0 42 34.28134683398025 38.0 33.0 40.0 22.0 41.0 43 34.2006877688053 37.0 33.0 40.0 22.0 41.0 44 33.865482020623745 37.0 33.0 40.0 21.0 41.0 45 33.83107028195725 37.0 33.0 40.0 20.0 41.0 46 33.800409585894215 37.0 33.0 40.0 21.0 41.0 47 33.73567497798301 37.0 33.0 40.0 20.0 41.0 48 33.68526655700886 36.0 33.0 40.0 20.0 41.0 49 33.54292264464812 36.0 32.0 40.0 20.0 41.0 50 33.43902342421263 36.0 32.0 40.0 20.0 41.0 51 33.26450674954685 36.0 32.0 40.0 20.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 2.0 12 0.0 13 7.0 14 3.0 15 18.0 16 54.0 17 133.0 18 338.0 19 617.0 20 1016.0 21 1610.0 22 2469.0 23 3788.0 24 5249.0 25 7044.0 26 8177.0 27 8716.0 28 9170.0 29 10363.0 30 12545.0 31 15539.0 32 20083.0 33 28838.0 34 37031.0 35 42773.0 36 53700.0 37 78358.0 38 66643.0 39 14929.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.91055743754863 23.34616298629588 25.35891187146738 16.384367704688106 2 36.19849305940626 22.664451765319864 28.63746289729599 12.499592277977884 3 31.165106450395374 23.26368664582236 32.81603116394153 12.755175739840732 4 26.995624560242675 27.212066707982498 30.378319439720048 15.413989292054781 5 21.482290885199458 35.82129194294688 28.905394511828597 13.791022660025067 6 20.379111585363013 41.044560522256965 28.702931404847 9.873396487533025 7 37.43587115052165 56.380267186065694 5.340459537666526 0.8434021257461313 8 85.26725596089597 3.636880437264395 9.280918143397 1.8149454584426417 9 80.669782439529 5.132404814381637 10.824670211130112 3.373142534959251 10 42.65121827340208 26.822284454840712 17.25596089596332 13.270536375793892 11 35.712954377070645 23.182841193437305 24.751522550522584 16.352681878969467 12 31.989403887105265 22.18520365132545 29.493912127749795 16.331480333819492 13 23.306788688160218 30.061694166546292 28.948962522191728 17.682554623101762 14 19.102825164137236 32.67414390024557 31.04442073184938 17.178610203767818 15 17.659955173875968 23.106888405317626 40.4499853220072 18.7831710987992 16 19.811795514591786 19.90265927952024 38.998261939265724 21.287283266622246 17 20.257959898791743 20.08275592128868 31.09707511870535 28.562209061214222 18 22.894174001779998 22.646744980359447 33.6785379787239 20.780543039136653 19 27.440624024379446 24.249907971315007 27.27194359923022 21.037524405075324 20 29.258831258999006 23.265783501936095 27.168032729594096 20.3073525094708 21 24.72193358091768 25.13315036322207 29.33082331890386 20.81409273695639 22 23.43166811893368 22.887883433438798 28.224848210915766 25.455600236711756 23 22.050072923995955 26.783376124730324 27.817825140838835 23.348725810434885 24 21.409832857269333 24.317473334979752 34.97555997707437 19.29713383067654 25 22.03632686725037 24.629438927900768 32.03343786549367 21.300796339355195 26 20.68595153000601 27.788003187221292 28.47577199252587 23.05027329024682 27 20.545462170385868 26.902663939200494 30.64135838998728 21.91051550042636 28 19.859324253169746 25.9425368231232 33.91315287944941 20.284986044257643 29 20.12981869184137 25.001514396082143 33.614234391236074 21.254432520840417 30 21.66168857492999 26.06555238179556 32.00944051219206 20.263318531082398 31 27.282194895786247 25.12942261901988 26.901499019137308 20.68688346605656 32 26.808305414082483 25.094009049099053 27.523100364852965 20.574585171965502 33 26.157814050799832 25.546464001640206 27.07507210855191 21.220649839008047 34 21.345063301756234 26.585339713988827 28.98554101217574 23.084055972079195 35 22.171224610567222 25.555084410107774 29.993429850843633 22.280261128481364 36 27.189933226781974 26.74167198646829 26.0991020796153 19.969292707134436 37 21.83293182421822 30.25460492900977 26.878433601886236 21.03402964488577 38 22.456630026047613 29.633469551319386 26.127759113169652 21.782141309463345 39 22.41469290377294 28.590400126743305 25.73355016378776 23.261356805695993 40 24.24967498730237 25.145032547866563 27.664521660523654 22.94077080430741 41 21.038223357113235 24.939074680695413 27.93827787537219 26.084424086819162 42 22.81356153340758 27.223249940589078 24.995456811753577 24.96773171424977 43 22.332682531324703 26.108887408146053 26.862590689026923 24.69583937150233 44 22.128588536254643 26.84138914387695 28.605311103552072 22.424711216316336 45 20.82434403351242 30.177021252801634 26.344434244922116 22.654200468763833 46 22.62134972298201 28.202248761689972 27.904961161565094 21.271440353762923 47 22.046578163806398 28.02541389609845 27.31178386539116 22.616224074703993 48 22.326158978970863 26.450441970671974 28.92263532876374 22.300763721593427 49 21.975751023964733 25.782942774466814 30.227578783543873 22.013727418024576 50 21.188731029276774 28.957815914671936 28.37698677116776 21.47646628488353 51 21.32246385253044 29.12300157963161 27.457398873289314 22.09713569454864 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 253.0 1 477.0 2 701.0 3 3600.5 4 6500.0 5 4692.0 6 2884.0 7 2838.0 8 2792.0 9 2846.0 10 2900.0 11 2781.0 12 2662.0 13 2626.5 14 2591.0 15 2403.0 16 2215.0 17 2156.0 18 2097.0 19 2124.5 20 2152.0 21 2223.5 22 2295.0 23 2440.0 24 2585.0 25 3053.5 26 3926.5 27 4331.0 28 4912.5 29 5494.0 30 6645.5 31 7797.0 32 8951.5 33 10106.0 34 11311.5 35 12517.0 36 13590.5 37 14664.0 38 16630.0 39 18596.0 40 21972.5 41 25349.0 42 27344.0 43 29339.0 44 29721.5 45 30104.0 46 30130.5 47 30157.0 48 29549.0 49 28941.0 50 28276.5 51 27612.0 52 26633.0 53 25654.0 54 24411.0 55 23168.0 56 22204.5 57 21241.0 58 20168.0 59 19095.0 60 17517.0 61 15939.0 62 14051.0 63 12163.0 64 10779.0 65 9395.0 66 8152.0 67 6909.0 68 6043.5 69 5178.0 70 4473.0 71 3768.0 72 3185.5 73 2603.0 74 2048.0 75 1091.0 76 689.0 77 530.5 78 372.0 79 292.0 80 212.0 81 154.0 82 96.0 83 72.0 84 48.0 85 33.0 86 18.0 87 12.5 88 7.0 89 8.0 90 9.0 91 5.0 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 429214.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 45.84388425094084 #Duplication Level Percentage of deduplicated Percentage of total 1 67.62924494115227 31.003872770607106 2 11.233457539212687 10.299706543310503 3 6.263965786748956 8.614935674387182 4 4.019317728562185 7.37044546863837 5 2.8027185387100975 6.424375213829587 6 1.9872854280918961 5.466292988341578 7 1.4177524058775879 4.549669403408152 8 1.1096054193402993 4.0694897926762685 9 0.8224328820875442 3.3933166065530145 >10 2.6864809204905167 16.737671406150955 >50 0.01613871111333052 0.5005623459919217 >100 0.010086694445749705 0.6672623235675393 >500 5.043347222874853E-4 0.12092106556681324 >1k 0.0010086694445749706 0.7814783969709919 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1726 0.40213040581155324 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1654 0.3853555569016854 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 523 0.12185063860917864 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.005125648278015163 0.0 2 0.0 0.0 0.0 0.017473800947778964 0.0 3 0.0 0.0 0.0 0.026560177440624024 0.0 4 0.0 0.0 0.0 0.03634550597138025 0.0 5 0.0 0.0 0.0 0.06150777933618195 0.0 6 0.0 0.0 0.0 0.09878522135811041 0.0 7 0.0 0.0 0.0 0.12418047873554916 0.0 8 0.0 0.0 0.0 0.30730591266827273 0.0 9 0.0 0.0 0.0 0.39863564562199744 0.0 10 0.0 0.0 0.0 0.5524050939624523 0.0 11 0.0 0.0 0.0 0.6570149156364891 0.0 12 0.0 0.0 0.0 0.7625566733610739 0.0 13 0.0 0.0 0.0 0.8173079163307814 0.0 14 0.0 0.0 0.0 0.8380434934554791 0.0 15 0.0 0.0 0.0 0.8627397987950067 0.0 16 0.0 0.0 0.0 0.9091036173097802 0.0 17 0.0 0.0 0.0 0.9659517163932211 0.0 18 0.0 0.0 0.0 1.0610091935491386 0.0 19 0.0 0.0 0.0 1.097587683533156 0.0 20 0.0 0.0 0.0 1.1381269017320033 0.0 21 0.0 0.0 0.0 1.1833258001835913 0.0 22 0.0 0.0 0.0 1.2422707553807657 0.0 23 0.0 0.0 0.0 1.3091371670076 0.0 24 0.0 0.0 0.0 1.3585297776866552 0.0 25 0.0 0.0 0.0 1.3993019798981394 0.0 26 0.0 0.0 0.0 1.4403071661222606 0.0 27 0.0 0.0 0.0 1.4876029206875825 0.0 28 0.0 0.0 0.0 1.53839343544246 0.0 29 0.0 0.0 0.0 1.5929116943995303 0.0 30 0.0 0.0 0.0 1.6653697223296537 0.0 31 0.0 0.0 0.0 1.7306052458680286 0.0 32 0.0 0.0 0.0 1.7932779452673957 0.0 33 0.0 0.0 0.0 1.8634061330711487 0.0 34 0.0 0.0 0.0 1.934932224950724 0.0 35 0.0 0.0 0.0 2.005759364792388 0.0 36 0.0 0.0 0.0 2.0775184406846003 0.0 37 0.0 0.0 0.0 2.156733004981198 0.0 38 0.0 0.0 0.0 2.243403057682182 0.0 39 0.0 0.0 0.0 2.368515472468279 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGTTAG 25 3.8867074E-5 45.0 2 GACGTAA 20 7.028342E-4 45.0 1 TAACGGG 50 2.1827873E-11 45.0 3 TGCGGGT 20 7.028342E-4 45.0 4 TAACGCC 20 7.028342E-4 45.0 12 CGGTCTA 100 0.0 45.0 31 ATAACGC 20 7.028342E-4 45.0 11 AAGGCGC 55 1.8189894E-12 45.0 6 TCGACGG 20 7.028342E-4 45.0 2 CGTTTTA 910 0.0 43.516483 1 CGTTTTT 1425 0.0 42.0 1 CGTTATT 240 0.0 41.249996 1 CGTTGAT 55 6.002665E-11 40.909092 25 CACGACG 110 0.0 40.909092 26 GGTACCT 205 0.0 40.609756 8 GTTGATC 200 0.0 40.5 16 GTAGCAT 195 0.0 40.384617 29 ACATACG 95 0.0 40.263157 17 TTACACG 140 0.0 40.178574 34 CGTATGG 45 1.9233994E-8 40.000004 2 >>END_MODULE