##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545704_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 733936 Sequences flagged as poor quality 0 Sequence length 50 %GC 45 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.504924135074447 31.0 31.0 33.0 30.0 34.0 2 31.70719654029779 31.0 31.0 34.0 30.0 34.0 3 31.726172309302175 31.0 31.0 34.0 30.0 34.0 4 35.64608494473632 37.0 35.0 37.0 33.0 37.0 5 26.995173966122387 35.0 22.0 37.0 0.0 37.0 6 31.28202050315014 35.0 25.0 37.0 17.0 37.0 7 15.113954077739749 0.0 0.0 32.0 0.0 37.0 8 25.151270683002334 17.0 17.0 35.0 17.0 37.0 9 33.201324093653945 32.0 32.0 37.0 28.0 39.0 10 36.05142410237405 37.0 35.0 39.0 32.0 39.0 11 37.009526716225935 39.0 37.0 39.0 34.0 39.0 12 37.05285065727802 39.0 35.0 39.0 34.0 39.0 13 36.613956802773 39.0 35.0 39.0 33.0 39.0 14 37.921559918031 40.0 36.0 41.0 33.0 41.0 15 38.19450469795731 40.0 37.0 41.0 33.0 41.0 16 38.232167382442064 40.0 37.0 41.0 34.0 41.0 17 38.25653190468924 40.0 37.0 41.0 34.0 41.0 18 38.20539938087245 40.0 36.0 41.0 34.0 41.0 19 38.137412526432826 40.0 36.0 41.0 34.0 41.0 20 38.13711413529245 40.0 36.0 41.0 34.0 41.0 21 37.99531975540101 40.0 36.0 41.0 34.0 41.0 22 37.889200148241805 40.0 35.0 41.0 34.0 41.0 23 37.762742255455514 39.0 35.0 41.0 33.0 41.0 24 37.57988162455582 39.0 35.0 41.0 33.0 41.0 25 37.40913921649844 39.0 35.0 41.0 33.0 41.0 26 37.15370413769048 39.0 35.0 40.0 33.0 41.0 27 36.94076050227813 39.0 35.0 40.0 32.0 41.0 28 36.946939515162086 39.0 35.0 40.0 32.0 41.0 29 36.850070033354406 38.0 35.0 40.0 32.0 41.0 30 36.606685051557626 38.0 35.0 40.0 31.0 41.0 31 36.37287856161845 38.0 35.0 40.0 31.0 41.0 32 36.07474766192148 38.0 35.0 40.0 30.0 41.0 33 35.79083326066578 38.0 35.0 40.0 29.0 41.0 34 35.465798107736916 38.0 35.0 40.0 27.0 41.0 35 35.20569777201282 38.0 34.0 40.0 26.0 41.0 36 34.984689400710685 38.0 34.0 40.0 25.0 41.0 37 34.84822246081402 38.0 34.0 40.0 24.0 41.0 38 34.676015347387235 38.0 34.0 40.0 24.0 41.0 39 34.58359175731944 38.0 34.0 40.0 23.0 41.0 40 34.33348820605612 37.0 34.0 40.0 23.0 41.0 41 34.119248817335574 37.0 33.0 40.0 22.0 40.0 42 34.11002049225001 37.0 33.0 40.0 22.0 40.0 43 33.987586111050554 37.0 33.0 40.0 22.0 40.0 44 33.75199199930239 37.0 33.0 40.0 21.0 40.0 45 33.52355246234004 36.0 33.0 39.0 20.0 40.0 46 33.48254343702993 36.0 33.0 39.0 20.0 40.0 47 33.34811073445096 36.0 33.0 39.0 20.0 40.0 48 33.244990026378325 36.0 33.0 39.0 20.0 40.0 49 33.1106322622136 35.0 32.0 39.0 20.0 40.0 50 33.177706230516016 35.0 33.0 39.0 20.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 2.0 13 1.0 14 7.0 15 10.0 16 46.0 17 134.0 18 306.0 19 648.0 20 1167.0 21 2149.0 22 3459.0 23 5224.0 24 8116.0 25 11812.0 26 14700.0 27 15304.0 28 15154.0 29 16035.0 30 18643.0 31 24092.0 32 32974.0 33 56792.0 34 60378.0 35 75179.0 36 100293.0 37 175779.0 38 76332.0 39 19199.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.34868435394912 22.362304070109655 26.62684484750714 17.662166728434087 2 36.47211745983301 22.913305792330664 28.330535632534716 12.284041115301607 3 29.91105491486996 22.795720607791413 34.68136186261472 12.611862614723899 4 25.745296592618427 25.932642628240067 33.53970918445205 14.782351594689455 5 17.025053955658258 47.01009352314098 25.10627629657082 10.85857622462994 6 19.790962699744938 39.428233524449 30.754316452660724 10.026487323145343 7 37.88654596586078 55.41900111181356 5.615476008807308 1.078976913518345 8 83.75089926097098 3.217446752850385 11.24771097207386 1.7839430141047723 9 79.6523130082187 4.535136578666259 12.794031087179263 3.0185193259357765 10 48.09738178805782 21.36099060408537 18.679421638943992 11.86220596891282 11 40.10635804756818 21.401457347779644 24.184261297987835 14.30792330666434 12 35.43238102504851 21.017500163501996 28.599087658869436 14.951031152580061 13 22.185994419131912 32.83651435547514 28.95933705391206 16.01815417148089 14 17.673748119727062 34.72305487126943 32.33592574829413 15.26727126070938 15 16.267630965097773 22.21201848662554 45.32561422249351 16.194736325783175 16 18.902874365067255 18.573009090710908 43.18578186653877 19.338334677683065 17 19.54053214449216 17.9642366636873 32.02336443504611 30.471866756774435 18 22.46313030018966 22.06200540646596 35.80543807634453 19.669426216999845 19 28.222896819341198 23.052009984521813 28.54513200061041 20.179961195526587 20 29.133194174968935 22.912488282357042 28.036777048679994 19.917540493994025 21 23.359802489590372 25.032836650607138 31.931394563013672 19.675966296788822 22 23.74266966056986 21.39055721479802 29.952611671862396 24.914161452769722 23 20.909043840334853 26.417426042597718 29.040270541300607 23.633259575766825 24 20.668423404765537 23.1873078851562 37.804522465174074 18.339746244904187 25 20.983982254583506 22.801443177606767 35.09025310108783 21.12432146672189 26 18.55352510300626 28.95538575570622 30.30127967561204 22.18980946567548 27 18.732559787229405 28.774716051535833 31.71271064506987 20.780013516164896 28 17.73151882452966 25.74965664581108 37.80206993525321 18.71675459440605 29 19.01010442327396 23.822649386322514 36.45181596215474 20.715430228248785 30 20.898143707353228 26.228444987028844 33.602248697434106 19.27116260818382 31 27.85433607290009 23.990647685901767 28.467741056440886 19.687275184757254 32 28.40819908002878 24.353758365852062 28.91042270715703 18.327619846962133 33 26.982052931045757 24.888137385276103 27.64505351965294 20.4847561640252 34 21.10211244577184 26.13593010834732 30.09894595714068 22.66301148874016 35 21.441515336487104 25.358205620108563 31.24018988031654 21.96008916308779 36 28.56584225327549 24.979834753983997 27.12266464650869 19.331658346231826 37 21.41385624904624 30.05561792853873 28.494718885570403 20.03580693684463 38 22.501825772274422 30.45647031893789 25.34158291731159 21.700120991476098 39 21.807351049682804 28.239519522138167 26.810784591572016 23.142344836607005 40 24.072671186588476 24.505678969283426 27.941128381766255 23.480521462361843 41 20.11442414597458 23.78150138431689 29.088367378082015 27.015707091626517 42 23.22804713217501 25.311062544963047 25.65795927710318 25.802931045758758 43 22.137080072376882 25.87759695668287 27.055628828671708 24.929694142268534 44 21.531986440234572 27.731028318545487 28.817362821826425 21.919622419393516 45 19.375940136469666 32.24886093610342 26.043823984652615 22.3313749427743 46 22.226597414488456 28.562027206731923 28.085827647097293 21.125547731682325 47 21.898775915066164 27.607993067515423 27.970286237492097 22.522944779926316 48 22.901588149375424 25.481513374463166 29.859824289856334 21.757074186305072 49 22.08053563253472 24.885139848706153 31.05924767282161 21.975076845937522 50 20.595528765450936 29.537997863573935 28.219218024459895 21.647255346515227 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 572.0 1 917.0 2 1262.0 3 8143.0 4 15024.0 5 10713.0 6 6402.0 7 6434.0 8 6466.0 9 6583.5 10 6701.0 11 6451.5 12 6202.0 13 6004.0 14 5806.0 15 5521.0 16 5236.0 17 4802.5 18 4369.0 19 4145.5 20 3922.0 21 3951.0 22 3980.0 23 4335.5 24 4691.0 25 5129.5 26 5568.0 27 6503.0 28 7438.0 29 8488.0 30 9538.0 31 10788.5 32 12039.0 33 13926.0 34 15813.0 35 17557.0 36 19301.0 37 21958.5 38 24616.0 39 31902.5 40 39189.0 41 46928.5 42 54668.0 43 56659.0 44 58650.0 45 57834.5 46 57019.0 47 56075.0 48 55131.0 49 53326.0 50 51521.0 51 47647.0 52 43773.0 53 40143.5 54 36514.0 55 35409.5 56 34305.0 57 33230.5 58 32156.0 59 29884.5 60 27613.0 61 24859.5 62 22106.0 63 19688.5 64 17271.0 65 14970.0 66 12669.0 67 11034.5 68 9400.0 69 8278.5 70 7157.0 71 5761.0 72 4365.0 73 3488.5 74 2612.0 75 2013.0 76 1414.0 77 1061.0 78 708.0 79 550.0 80 392.0 81 293.5 82 195.0 83 141.0 84 87.0 85 65.0 86 43.0 87 30.5 88 18.0 89 12.5 90 7.0 91 5.5 92 4.0 93 3.0 94 2.0 95 1.0 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 733936.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 37.46219316068315 #Duplication Level Percentage of deduplicated Percentage of total 1 71.2511096870577 26.692228340095774 2 8.987124126623499 6.733547599812108 3 4.394519135601861 4.938849741187058 4 2.8271749425732335 4.23648695190887 5 2.034658213437725 3.8111379503887273 6 1.5529149966675717 3.4905360940369325 7 1.2268779222451403 3.2173076395407536 8 1.0532490463719797 3.1565615377193943 9 0.8704842364968037 2.9349223749875755 >10 5.726320313182074 37.00343761030131 >50 0.06013739151864794 1.449845930515334 >100 0.013847425329038363 0.8464598177537306 >500 3.9564072368680997E-4 0.12316724015992815 >1k 7.912814473736199E-4 0.6238398481746542 >5k 3.9564072368680997E-4 0.7416713234179066 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5004 0.6818033180004796 No Hit CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2145 0.29225981556974995 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2064 0.2812234309258573 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 831 0.11322513134660243 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.00912886137210874 0.0 2 0.0 0.0 0.0 0.025206557520001744 0.0 3 0.0 0.0 0.0 0.03678794881297552 0.0 4 0.0 0.0 0.0 0.05354690327221992 0.0 5 0.0 0.0 0.0 0.08597479889254649 0.0 6 0.0 0.0 0.0 0.14905931852368598 0.0 7 0.0 0.0 0.0 0.19388611541060802 0.0 8 0.0 0.0 0.0 0.39962612543873033 0.0 9 0.0 0.0 0.0 0.498817335571494 0.0 10 0.0 0.0 0.0 0.6593217937258835 0.0 11 0.0 0.0 0.0 0.8121961587931372 0.0 12 0.0 0.0 0.0 0.9457227878180113 0.0 13 0.0 0.0 0.0 1.0115323406945564 0.0 14 0.0 0.0 0.0 1.0397364347845044 0.0 15 0.0 0.0 0.0 1.0735268470275336 0.0 16 0.0 0.0 0.0 1.1536428244424581 0.0 17 0.0 0.0 0.0 1.2385276100368425 0.0 18 0.0 0.0 0.0 1.3724629940485273 0.0 19 0.0 0.0 0.0 1.4288711822284232 0.0 20 0.0 0.0 0.0 1.4895031719386977 0.0 21 0.0 0.0 0.0 1.5679841294063788 0.0 22 0.0 0.0 0.0 1.646056331887249 0.0 23 0.0 0.0 0.0 1.744975038695472 0.0 24 0.0 0.0 0.0 1.8205947112554772 0.0 25 0.0 0.0 0.0 1.8791829260316977 0.0 26 0.0 0.0 0.0 1.944174968934621 0.0 27 0.0 0.0 0.0 2.0188408798587343 0.0 28 0.0 0.0 0.0 2.08492293605982 0.0 29 0.0 0.0 0.0 2.1604063569575547 0.0 30 0.0 0.0 0.0 2.258780057116697 0.0 31 0.0 0.0 0.0 2.343664842711081 0.0 32 0.0 0.0 0.0 2.4286858799677358 0.0 33 0.0 0.0 0.0 2.5157506921584445 0.0 34 0.0 0.0 0.0 2.611535610734451 0.0 35 0.0 0.0 0.0 2.7276220269887292 0.0 36 0.0 0.0 0.0 2.8198644023457087 0.0 37 0.0 0.0 0.0 2.9187831091539316 0.0 38 0.0 0.0 0.0 3.033098253798696 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGTTAG 25 4.4412634E-5 44.0 2 GACGTAA 20 7.854619E-4 44.0 1 ATTAACG 25 4.4412634E-5 44.0 1 GTTCGAT 35 1.4451325E-7 44.0 39 CGTAAAT 20 7.854619E-4 44.0 16 CGACTTA 30 2.5264617E-6 44.0 17 GATTACG 20 7.854619E-4 44.0 1 AGTACGG 55 1.8189894E-12 44.0 2 TAGTCCA 25 4.4412634E-5 44.0 29 CGTTTTA 2865 0.0 43.078533 1 CGTTATT 1685 0.0 42.824924 1 AGGCGAT 470 0.0 42.59574 7 TAACGGG 185 0.0 41.621624 3 GTTTTAT 3175 0.0 41.36693 2 GTTATTT 1920 0.0 40.677082 2 ACGGGAT 130 0.0 40.615387 5 ACTAACC 185 0.0 40.432434 14 GTTGATC 525 0.0 40.22857 16 ACGGTCT 175 0.0 40.22857 30 AGGTACC 315 0.0 39.11111 7 >>END_MODULE