SRR1545701_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545701_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	345757
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1463	0.42312953895365824	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1390	0.40201644507558776	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGCGATA	25	3.8851285E-5	45.000004	7
AGGCCGA	20	7.026438E-4	45.0	7
AGTACGG	20	7.026438E-4	45.0	2
CGTTTTA	840	0.0	43.660713	1
AGGCGAT	250	0.0	43.2	7
CGTTATT	220	0.0	42.954544	1
CGTTTTT	1220	0.0	42.78688	1
TAGGTAC	75	0.0	42.0	6
ACGGGCT	60	3.6379788E-12	41.249996	5
CAACCCG	55	6.002665E-11	40.909092	23
GTTAGGT	55	6.002665E-11	40.909092	4
GACCCGA	45	1.9215804E-8	40.0	40
GTTTTAT	1000	0.0	39.825	2
GTAAGGT	85	0.0	39.705883	4
GTAAGGC	85	0.0	39.705883	4
GACGTCG	40	3.4488767E-7	39.375	19
TCGCTAT	40	3.4488767E-7	39.375	23
GGCGATA	80	0.0	39.375	8
GTACGGG	75	0.0	39.0	3
GCGACGT	35	6.235623E-6	38.57143	17