##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545700_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1475678 Sequences flagged as poor quality 0 Sequence length 50 %GC 43 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.46538946843417 31.0 31.0 33.0 30.0 34.0 2 31.65650365459131 31.0 31.0 34.0 30.0 34.0 3 31.629198917378993 31.0 31.0 34.0 30.0 34.0 4 35.580561613034824 37.0 35.0 37.0 33.0 37.0 5 27.17088822900389 35.0 26.0 37.0 0.0 37.0 6 31.359977583185493 35.0 28.0 37.0 17.0 37.0 7 14.931585345854584 0.0 0.0 32.0 0.0 37.0 8 25.05053744787142 17.0 17.0 35.0 17.0 37.0 9 33.11839710289101 32.0 32.0 37.0 28.0 39.0 10 35.92949545903646 37.0 35.0 39.0 32.0 39.0 11 36.93650240770683 38.0 37.0 39.0 34.0 39.0 12 37.131162082784996 39.0 37.0 39.0 34.0 39.0 13 36.82569164817799 39.0 35.0 39.0 33.0 39.0 14 38.2167024242416 40.0 37.0 41.0 33.0 41.0 15 38.42825670640885 40.0 38.0 41.0 34.0 41.0 16 38.41470496951232 40.0 37.0 41.0 34.0 41.0 17 38.41436614220718 40.0 37.0 41.0 34.0 41.0 18 38.365046439670444 40.0 37.0 41.0 34.0 41.0 19 38.285736454700825 40.0 37.0 41.0 34.0 41.0 20 38.284725394022274 40.0 37.0 41.0 34.0 41.0 21 38.14527898362651 40.0 37.0 41.0 34.0 41.0 22 37.98877736199903 40.0 36.0 41.0 34.0 41.0 23 37.821817496770976 39.0 36.0 41.0 33.0 41.0 24 37.63659822806873 39.0 35.0 41.0 33.0 41.0 25 37.45117295236495 39.0 35.0 41.0 33.0 41.0 26 37.18993710009907 39.0 35.0 40.0 33.0 41.0 27 36.98035343753854 39.0 35.0 40.0 32.0 41.0 28 36.97530220007346 39.0 35.0 40.0 32.0 41.0 29 36.86449821709072 39.0 35.0 40.0 32.0 41.0 30 36.59509391615244 38.0 35.0 40.0 31.0 41.0 31 36.35886826258845 38.0 35.0 40.0 31.0 41.0 32 36.0366767004726 38.0 35.0 40.0 30.0 41.0 33 35.68036726169259 38.0 35.0 40.0 28.0 41.0 34 35.26817232485678 38.0 35.0 40.0 25.0 41.0 35 34.96368720005313 38.0 34.0 40.0 23.0 41.0 36 34.72122509111066 38.0 34.0 40.0 22.0 41.0 37 34.5812650185203 38.0 34.0 40.0 22.0 41.0 38 34.4006863285893 38.0 34.0 40.0 21.0 41.0 39 34.28454242727749 38.0 34.0 40.0 21.0 41.0 40 34.0657785777114 38.0 33.0 40.0 20.0 41.0 41 33.836001485418905 37.0 33.0 40.0 18.0 40.0 42 33.8239399110104 37.0 33.0 40.0 18.0 40.0 43 33.70791324394617 37.0 33.0 40.0 18.0 40.0 44 33.46959973652789 37.0 33.0 40.0 18.0 40.0 45 33.289067804765 37.0 33.0 39.0 18.0 40.0 46 33.21511671245353 36.0 33.0 39.0 18.0 40.0 47 33.0333372185531 36.0 32.0 39.0 18.0 40.0 48 32.938329364536166 36.0 32.0 39.0 18.0 40.0 49 32.76382923645944 36.0 32.0 39.0 17.0 40.0 50 32.891676232890916 36.0 32.0 39.0 18.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 1.0 11 3.0 12 9.0 13 7.0 14 14.0 15 41.0 16 91.0 17 308.0 18 742.0 19 1512.0 20 2907.0 21 4938.0 22 7934.0 23 12425.0 24 18940.0 25 27931.0 26 33990.0 27 33412.0 28 31877.0 29 32017.0 30 36088.0 31 45479.0 32 60938.0 33 99152.0 34 112941.0 35 148199.0 36 208496.0 37 364680.0 38 150119.0 39 40486.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.44020714546127 21.971595429355183 24.724973876414776 20.86322354876877 2 37.9263633394277 23.27580949231472 27.042891470903545 11.75493569735403 3 28.741093924284293 23.041679824460353 36.41397378018782 11.803252471067536 4 25.06813817106442 26.09464937472809 34.888776548813496 13.948435905393994 5 16.719704434165177 46.81854713562173 25.95044447365889 10.511303956554208 6 18.829582063295653 38.67164787982202 32.6754210606921 9.823348996190227 7 36.28169560025968 55.91287530206455 6.783932538128237 1.0214965595475436 8 81.22856070226703 3.3161706009034493 13.635766068207293 1.8195026286222333 9 76.72276743300368 5.096775854895173 15.149985294894957 3.0304714172061926 10 39.144921859646885 26.739234440033666 21.84216339879025 12.273680301529195 11 32.912193581526594 22.773870722474687 29.323402530904442 14.990533165094282 12 30.679389406089946 20.93322527001148 33.10430866354313 15.283076660355444 13 21.683931047288095 30.10121449259256 31.779832727735997 16.43502173238335 14 17.407523863607103 31.44324168280614 33.92481286567937 17.22442158790739 15 16.436648103448043 23.42624881579857 42.73445833034036 17.402644750413028 16 18.41140140328717 20.188957211532596 41.20892227166089 20.190719113519346 17 18.421837284285598 20.726066255646558 34.697339121407246 26.154757338660602 18 20.998551174443207 22.84441456740563 36.32099956765636 19.83603469049481 19 25.16924423891933 25.015348876923017 30.380001599264876 19.435405284892777 20 26.505511364945466 23.03456445105233 31.521714086677445 18.938210097324756 21 22.13477465951244 25.464837179926786 33.02258351754245 19.37780464301833 22 22.34477982324057 23.39378915996579 31.261765778171117 22.99966523862252 23 20.069757765583006 26.446487648389414 31.858169600685244 21.625584985342332 24 19.628130256058572 23.57824674488608 38.802774046912674 17.990848952142677 25 19.846063978727067 25.035068626082385 34.91547614045883 20.203391254731724 26 18.949120336550386 28.106199319905834 31.901878323048795 21.042802020494985 27 18.469679699771902 27.53988336208848 33.27074063582977 20.719696302309853 28 18.25364341001221 25.8168787499712 36.79969478436353 19.129783055653064 29 18.372097435890485 23.617754008665848 36.8564144752446 21.15373408019907 30 19.68728950353668 27.0731826319834 34.16246633750723 19.077061526972685 31 23.92554473265848 26.536751242479728 30.56825405000278 18.969449974859014 32 24.823437091289563 25.260863142230217 30.313591447456695 19.602108319023525 33 23.987075771272597 26.757260052667313 29.446464608132665 19.809199567927422 34 20.131695396963295 26.57571638257126 31.683605773075158 21.608982447390286 35 21.230241285700536 26.298420116041576 31.375340690855325 21.095997907402563 36 24.714470229955314 27.951084179610998 27.70380801231705 19.630637578116637 37 21.262768706994343 30.32626358866907 29.03079127018225 19.380176434154333 38 21.60769490363074 29.128847892290864 29.138606118679007 20.12485108539939 39 21.425270282541316 29.887143401202703 27.724815305235968 20.96277101102002 40 23.560017835869342 26.514930764028467 28.904205388980525 21.02084601112167 41 20.51091091688024 25.660001707689617 29.726810320408653 24.10227705502149 42 21.030943064814952 27.770150398664207 27.21298277808573 23.985923758435106 43 21.457458876529977 27.368030152919538 28.13377986254454 23.040731108005946 44 21.052831308727242 28.044668281291717 29.34949223340051 21.553008176580526 45 19.452346650149966 31.6789977217252 26.891842258270437 21.9768133698544 46 21.622061181368835 29.812533628610034 28.196395148535114 20.369010041486018 47 20.716782387485615 28.462713410378143 29.426880389895356 21.393623812240882 48 21.402636618557707 26.132665798365224 30.72303036299247 21.741667220084597 49 21.35648833959712 26.653985490059483 30.342052941088777 21.647473229254622 50 19.770708786063086 28.703822920718476 30.19859346009089 21.32687483312755 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1203.0 1 1918.5 2 2634.0 3 20956.0 4 39278.0 5 27976.5 6 16675.0 7 16589.5 8 16504.0 9 16357.0 10 16210.0 11 16165.5 12 16121.0 13 15388.5 14 14656.0 15 13968.0 16 13280.0 17 12533.0 18 11786.0 19 11404.5 20 11023.0 21 10741.5 22 10460.0 23 10901.5 24 11343.0 25 13011.0 26 14679.0 27 16939.0 28 19199.0 29 22251.5 30 25304.0 31 29723.0 32 34142.0 33 38620.0 34 43098.0 35 46307.0 36 49516.0 37 54578.0 38 59640.0 39 69492.0 40 79344.0 41 89021.5 42 98699.0 43 101361.5 44 104024.0 45 105875.5 46 107727.0 47 107508.0 48 107289.0 49 102534.0 50 97779.0 51 90132.5 52 82486.0 53 75693.5 54 68901.0 55 66011.5 56 63122.0 57 60671.5 58 58221.0 59 54624.5 60 51028.0 61 44981.0 62 38934.0 63 33655.0 64 28376.0 65 24222.0 66 20068.0 67 17358.5 68 14649.0 69 12873.5 70 11098.0 71 9299.0 72 7500.0 73 5984.0 74 4468.0 75 3544.0 76 2620.0 77 2014.0 78 1408.0 79 1024.5 80 641.0 81 464.5 82 288.0 83 229.5 84 171.0 85 112.0 86 53.0 87 34.5 88 16.0 89 13.5 90 11.0 91 6.0 92 1.0 93 3.0 94 5.0 95 2.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1475678.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 33.99057417791288 #Duplication Level Percentage of deduplicated Percentage of total 1 71.5067652222616 24.305560075098846 2 8.245399424962994 5.605317215614498 3 4.321426511958703 4.406633052273949 4 2.800647592526992 3.807824789599274 5 2.0918842229773795 3.5552172926359136 6 1.555129352845185 3.1715843774480357 7 1.229894596382625 2.9263376456550487 8 0.9931400759029874 2.700592113523082 9 0.8387167352552584 2.5657617063555707 >10 6.225063334587289 40.330591226347074 >50 0.16697788291925303 3.4945883178426467 >100 0.023743637401868398 1.3281075816452137 >500 4.8456400716895753E-4 0.12418839057535863 >1k 2.4228200358447876E-4 0.09412952946129637 >5k 2.4228200358447876E-4 0.4796241291186265 >10k+ 2.4228200358447876E-4 1.1039425568054924 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 13405 0.9083960050905414 No Hit CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5824 0.39466604503150415 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.009825991849170348 0.0 2 0.0 0.0 0.0 0.034086026897466794 0.0 3 0.0 0.0 0.0 0.05068856484951324 0.0 4 0.0 0.0 0.0 0.06654568273024332 0.0 5 0.0 0.0 0.0 0.10971228140556409 0.0 6 0.0 0.0 0.0 0.21996668649935827 0.0 7 0.0 0.0 0.0 0.2922046679560175 0.0 8 0.0 0.0 0.0 0.6173433499720129 0.0 9 0.0 0.0 0.0 0.8074932336187163 0.0 10 0.0 0.0 0.0 1.080384745181537 0.0 11 0.0 0.0 0.0 1.274329494645851 0.0 12 0.0 0.0 0.0 1.456618584813218 0.0 13 0.0 0.0 0.0 1.5455946351439813 0.0 14 0.0 0.0 0.0 1.5888289992803308 0.0 15 0.0 0.0 0.0 1.6371457729938375 0.0 16 0.0 0.0 0.0 1.7289679726878087 0.0 17 0.0 0.0 0.0 1.8342077336654745 0.0 18 0.0 0.0 0.0 2.00016534772491 0.0 19 0.0 0.0 0.0 2.070573661733793 0.0 20 0.0 0.0 0.0 2.1480973491506954 0.0 21 0.0 0.0 0.0 2.2351082011116246 0.0 22 0.0 0.0 0.0 2.3329615268371557 0.0 23 0.0 0.0 0.0 2.4458587849110716 0.0 24 0.0 0.0 0.0 2.532191982261713 0.0 25 0.0 0.0 0.0 2.6046332601014583 0.0 26 0.0 0.0 0.0 2.6775488961684055 0.0 27 0.0 0.0 0.0 2.755682472734567 0.0 28 0.0 0.0 0.0 2.8315120236257503 0.0 29 0.0 0.0 0.0 2.9202170121123987 0.0 30 0.0 0.0 0.0 3.0368413705428963 0.0 31 0.0 0.0 0.0 3.1294089903081836 0.0 32 0.0 0.0 0.0 3.2230608574499313 0.0 33 0.0 0.0 0.0 3.314408698916701 0.0 34 6.776546102876101E-5 0.0 0.0 3.4046045275459824 0.0 35 6.776546102876101E-5 0.0 0.0 3.5181794402301856 0.0 36 6.776546102876101E-5 0.0 0.0 3.612780023826336 0.0 37 6.776546102876101E-5 0.0 0.0 3.7151058699797654 0.0 38 6.776546102876101E-5 0.0 0.0 3.8187870253537697 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AGCGTAA 50 2.7284841E-11 44.0 1 TCGCGAA 25 4.443458E-5 44.0 1 CGTTTTA 7735 0.0 43.65869 1 CGTTATT 4220 0.0 43.113743 1 GTTTTAT 8380 0.0 42.004776 2 AGGCGAT 1040 0.0 41.67308 7 CGACGGT 350 0.0 41.485718 28 CGGTCTA 345 0.0 41.449276 31 CACGACG 360 0.0 40.944443 26 GTTATTT 4615 0.0 40.66305 2 CGTTTTT 3730 0.0 39.87131 1 TACGGGA 325 0.0 39.26154 4 CGTTTAG 80 0.0 38.5 2 GCGCGAC 860 0.0 38.11628 9 TCACGAC 395 0.0 37.873417 25 CATACGA 810 0.0 37.753086 18 ACGTGGC 880 0.0 37.5 26 CGTTAAG 100 0.0 37.399998 2 ATGGGCG 380 0.0 37.05263 5 ACCCGCT 855 0.0 37.05263 34 >>END_MODULE