SRR1545699_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545699_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	558836
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3542	0.6338174348109284	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3294	0.589439477771654	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	634	0.11345009985040334	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACTTCG	30	2.1634914E-6	45.000004	11
TCGTAAG	30	2.1634914E-6	45.000004	2
TTTACGG	20	7.030171E-4	45.0	2
TCGATAG	35	1.2104283E-7	45.0	2
ATCGTAG	20	7.030171E-4	45.0	2
TGCGAAA	25	3.888225E-5	45.0	1
CGTAAAG	20	7.030171E-4	45.0	2
ATGCGAA	20	7.030171E-4	45.0	1
CGCGTAA	25	3.888225E-5	45.0	31
GCGTAAC	25	3.888225E-5	45.0	32
ACGACAG	20	7.030171E-4	45.0	2
CGTTTTA	2020	0.0	44.44307	1
CGTTTTT	2635	0.0	43.633778	1
TCTCACG	115	0.0	43.04348	23
CGGTCTA	110	0.0	42.954548	31
ATAGGCC	105	0.0	42.857147	5
AGGCGAT	400	0.0	42.1875	7
GTTTTAT	2260	0.0	41.615044	2
CGTTATT	440	0.0	40.397728	1
GCGCGAC	330	0.0	40.227272	9