##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545696_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 996029 Sequences flagged as poor quality 0 Sequence length 50 %GC 45 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.49639016534659 31.0 31.0 33.0 30.0 34.0 2 31.688740990473168 31.0 31.0 34.0 30.0 34.0 3 31.728139441723084 31.0 31.0 34.0 30.0 34.0 4 35.64315998831359 37.0 35.0 37.0 33.0 37.0 5 27.115136205873522 35.0 25.0 37.0 0.0 37.0 6 31.33771607051602 35.0 26.0 37.0 17.0 37.0 7 14.977252670353975 0.0 0.0 32.0 0.0 37.0 8 25.068089382939654 17.0 17.0 35.0 17.0 37.0 9 33.11173871443502 32.0 32.0 37.0 28.0 39.0 10 35.98318020860838 37.0 35.0 39.0 32.0 39.0 11 36.98698431471373 39.0 37.0 39.0 34.0 39.0 12 37.00832505880853 39.0 35.0 39.0 33.0 39.0 13 36.52217555914537 39.0 35.0 39.0 33.0 39.0 14 37.863195750324536 40.0 36.0 41.0 33.0 41.0 15 38.13166684905761 40.0 36.0 41.0 33.0 41.0 16 38.19976325990508 40.0 36.0 41.0 34.0 41.0 17 38.21742238428801 40.0 36.0 41.0 34.0 41.0 18 38.20293786626694 40.0 36.0 41.0 34.0 41.0 19 38.13654421708605 40.0 36.0 41.0 34.0 41.0 20 38.143744810643064 40.0 36.0 41.0 34.0 41.0 21 37.989566568844886 40.0 36.0 41.0 34.0 41.0 22 37.887830575214174 40.0 35.0 41.0 33.0 41.0 23 37.77352767841097 40.0 35.0 41.0 33.0 41.0 24 37.60947623010976 39.0 35.0 41.0 33.0 41.0 25 37.423138282118295 39.0 35.0 41.0 33.0 41.0 26 37.14925971030964 39.0 35.0 40.0 33.0 41.0 27 36.94087119953335 39.0 35.0 40.0 32.0 41.0 28 36.94335405896816 39.0 35.0 40.0 32.0 41.0 29 36.890342550267114 39.0 35.0 40.0 32.0 41.0 30 36.69936417513948 38.0 35.0 40.0 32.0 41.0 31 36.51303827498999 38.0 35.0 40.0 31.0 41.0 32 36.26021029508177 38.0 35.0 40.0 31.0 41.0 33 36.03004731789938 38.0 35.0 40.0 30.0 41.0 34 35.77951947182261 38.0 35.0 40.0 30.0 41.0 35 35.61090189141079 38.0 35.0 40.0 29.0 41.0 36 35.407998160696124 38.0 35.0 40.0 27.0 41.0 37 35.26236786278311 38.0 34.0 40.0 27.0 41.0 38 35.080868127333645 38.0 34.0 40.0 27.0 41.0 39 35.0251087066742 38.0 34.0 40.0 26.0 41.0 40 34.79116772704409 38.0 34.0 40.0 25.0 41.0 41 34.582623598308885 37.0 34.0 40.0 24.0 40.0 42 34.58114773766627 37.0 34.0 40.0 24.0 40.0 43 34.43934162559524 37.0 33.0 40.0 24.0 40.0 44 34.23271109576127 37.0 33.0 40.0 23.0 40.0 45 34.00464845903081 36.0 33.0 40.0 23.0 40.0 46 33.974663388315 36.0 33.0 39.0 23.0 40.0 47 33.78331755400696 36.0 33.0 39.0 23.0 40.0 48 33.697963613509245 36.0 33.0 39.0 23.0 40.0 49 33.54313478824412 36.0 33.0 39.0 23.0 40.0 50 33.66056108808077 36.0 33.0 39.0 23.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 2.0 12 2.0 13 3.0 14 4.0 15 19.0 16 61.0 17 148.0 18 436.0 19 803.0 20 1562.0 21 2631.0 22 4103.0 23 6325.0 24 9285.0 25 13568.0 26 17040.0 27 18355.0 28 18566.0 29 20540.0 30 24662.0 31 32346.0 32 44909.0 33 80817.0 34 83684.0 35 103418.0 36 134022.0 37 243882.0 38 108286.0 39 26550.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.32506282447599 23.785552428694345 27.52490138339346 16.364483363436204 2 34.98271636669214 24.342865518975852 28.08090929079374 12.593508823538272 3 30.83384118333904 23.366387926455957 33.21198479160748 12.587786098597531 4 27.073709701223557 26.57994897738921 31.406615670828863 14.939725650558366 5 17.377907671362983 47.62722772128121 23.905127260350852 11.089737347004956 6 20.634640156059714 40.25003288056874 28.79604911101986 10.319277852351687 7 38.03543872718566 56.124871866180605 4.676470263416025 1.1632191432177177 8 84.91961579431924 3.748987228283514 9.216297919036494 2.1150990583607503 9 80.4148272791254 5.547529238606506 10.86092874805854 3.176714734209546 10 48.00081122136002 23.08436802542898 17.022195136888584 11.892625616322416 11 42.701266730185566 21.3371297422063 21.91191220335954 14.049691324248592 12 39.335300478198924 20.124514446868517 26.401841713444085 14.13834336148847 13 22.530167294325768 35.92194604775564 25.546244135461922 16.001642522456674 14 15.748336644816566 40.02503943158281 28.824562337040387 15.402061586560231 15 14.982595888272328 23.289582933830243 45.67176256916214 16.056058608735288 16 16.06449209812164 17.91785178945593 46.042434507429 19.97522160499343 17 16.28055006430536 18.160816602729437 31.817547481047235 33.741085851917965 18 20.21256409200937 23.171212886371784 34.48092374820412 22.13529927341473 19 28.8065909727528 24.085142099276226 26.629043933459766 20.479222994511204 20 31.0700792848401 22.26702234573491 26.265600700381214 20.397297669043773 21 22.805259686213954 26.994695937568082 28.769041865246898 21.431002510971066 22 22.260496431328807 24.195982245496868 26.56348359334919 26.980037729825135 23 21.443451947684256 28.768740669197385 25.86089360851943 23.926913774598933 24 20.33394609996295 24.131124696168484 37.39820828510013 18.13672091876843 25 19.806351019900024 24.422381276047183 34.89928506097714 20.871982643075654 26 17.767554960749134 32.6649123670094 28.440336576545462 21.127196095696007 27 19.891589501912094 30.83705394120051 29.009396312757964 20.261960244129437 28 17.738439342629583 27.881818702065903 36.548534229425044 17.831207725879466 29 17.98953644923993 24.695666491638296 36.164609664979636 21.15018739414214 30 19.778741382028034 27.766661412468913 32.35307405708067 20.101523148422384 31 27.95721811312723 26.233573520449703 25.761298114813926 20.047910251609142 32 29.348141469776483 26.068216889267283 26.68105045134228 17.902591189613958 33 27.198103669672268 26.75725305186897 25.459600071885458 20.585043206573303 34 20.46586996964948 27.02672311749959 28.225182198510286 24.282224714340646 35 21.094265327615965 24.81624531012651 30.330040591187608 23.75944877106992 36 28.14305607567651 25.59543949021565 25.956975148313955 20.304529285793887 37 21.263637906125226 30.92450119424234 27.983723365484337 19.8281375341481 38 20.770780770439416 31.552093362743456 25.09143810069787 22.585687766119257 39 21.41644470191129 30.151230536460282 25.852058524400395 22.580266237228034 40 23.46578262279512 25.65256634093987 27.934929605463292 22.946721430801713 41 18.776461327933223 25.024371780339727 28.291445329403057 27.90772156232399 42 22.534484437702115 27.710839744625908 24.198391813892968 25.556284003779005 43 22.76901576158927 27.075617276203808 25.71581751133752 24.439549450869404 44 21.088341805308882 29.624137449813208 28.187231496271696 21.100289248606217 45 18.528777776550683 34.0618596446489 24.237045306913753 23.172317271886662 46 21.93048595974615 31.306819379757016 26.145825071358363 20.61686958913847 47 22.628658402516393 28.40007670459394 26.327145093164955 22.644119799724706 48 23.250327048710428 25.16623511966017 29.016123024530412 22.567314807098988 49 21.259220364065705 25.250268817474193 30.55403005334182 22.936480765118283 50 19.776030617582418 30.568387065035257 27.492271811362922 22.163310506019403 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 944.0 1 1335.5 2 1727.0 3 8300.5 4 14874.0 5 10979.0 6 7084.0 7 7106.5 8 7129.0 9 7274.5 10 7420.0 11 7337.0 12 7254.0 13 6874.0 14 6494.0 15 6177.0 16 5860.0 17 5460.5 18 5061.0 19 4950.0 20 4839.0 21 5094.0 22 5349.0 23 5647.0 24 5945.0 25 7046.5 26 8148.0 27 9762.5 28 11377.0 29 13505.0 30 15633.0 31 16936.5 32 18240.0 33 19979.0 34 21718.0 35 22798.0 36 23878.0 37 27920.0 38 31962.0 39 43082.0 40 54202.0 41 67880.0 42 81558.0 43 86703.5 44 91849.0 45 90699.0 46 89549.0 47 84252.0 48 78955.0 49 73857.0 50 68759.0 51 62892.0 52 57025.0 53 52887.0 54 48749.0 55 46231.5 56 43714.0 57 42977.5 58 42241.0 59 39879.0 60 37517.0 61 32380.0 62 27243.0 63 22855.5 64 18468.0 65 15858.0 66 13248.0 67 11841.0 68 10434.0 69 9377.5 70 8321.0 71 7114.5 72 5908.0 73 4652.5 74 3397.0 75 2636.5 76 1876.0 77 1448.5 78 1021.0 79 795.0 80 569.0 81 427.5 82 286.0 83 205.0 84 124.0 85 83.0 86 42.0 87 32.0 88 22.0 89 15.5 90 9.0 91 6.5 92 4.0 93 3.5 94 3.0 95 1.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 996029.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 25.867152996357095 #Duplication Level Percentage of deduplicated Percentage of total 1 69.95266307758013 18.09476238330385 2 7.1597345202982625 3.7040389649970904 3 3.5245450174802677 2.735098356291305 4 2.367003293136349 2.449105453057561 5 1.887420838697216 2.4411101801546753 6 1.5457659248623394 2.399073820498174 7 1.253540037993065 2.269785836487813 8 1.1118029205564555 2.300734099826439 9 0.9771551598801004 2.2748599819618502 >10 9.774130569465257 51.466620613478966 >50 0.39703361970206597 6.533601736618304 >100 0.046659933089115535 2.0177073272350046 >500 8.483624198021003E-4 0.13781284479891048 >1k 0.0016967248396042005 1.1756884012900684 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4772 0.479102516091399 No Hit CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2174 0.21826673721347473 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2060 0.20682128733199534 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 1709 0.17158134953901943 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.008734685435865823 0.0 2 0.0 0.0 0.0 0.03242877466419151 0.0 3 0.0 0.0 0.0 0.04648459030811352 0.0 4 0.0 0.0 0.0 0.06917469270473048 0.0 5 0.0 0.0 0.0 0.12690393552798163 0.0 6 0.0 0.0 0.0 0.23684049360008594 0.0 7 0.0 0.0 0.0 0.3104327283643348 0.0 8 0.0 0.0 0.0 0.6769883206211867 0.0 9 0.0 0.0 0.0 0.8474652846453266 0.0 10 0.0 0.0 0.0 1.1302883751376718 0.0 11 0.0 0.0 0.0 1.32937896386551 0.0 12 0.0 0.0 0.0 1.5131085540682048 0.0 13 0.0 0.0 0.0 1.5923231150900226 0.0 14 0.0 0.0 0.0 1.6243502950215305 0.0 15 0.0 0.0 0.0 1.6643089709235375 0.0 16 0.0 0.0 0.0 1.7554709752426887 0.0 17 0.0 0.0 0.0 1.8557692597303894 0.0 18 0.0 0.0 0.0 2.010684427863044 0.0 19 0.0 0.0 0.0 2.0716264285477632 0.0 20 0.0 0.0 0.0 2.145218663312012 0.0 21 0.0 0.0 0.0 2.2213208651555325 0.0 22 0.0 0.0 0.0 2.309370510296387 0.0 23 0.0 0.0 0.0 2.4071588277048157 0.0 24 0.0 0.0 0.0 2.4850682058454123 0.0 25 0.0 0.0 0.0 2.541191069737929 0.0 26 0.0 0.0 0.0 2.605546625650458 0.0 27 0.0 0.0 0.0 2.6730145407412835 0.0 28 0.0 0.0 0.0 2.7428920242282104 0.0 29 0.0 0.0 0.0 2.8174882458241677 0.0 30 0.0 0.0 0.0 2.9130677922028374 0.0 31 0.0 0.0 0.0 3.0014186333932042 0.0 32 0.0 0.0 0.0 3.0777216326030667 0.0 33 0.0 0.0 0.0 3.1554302133773215 0.0 34 0.0 0.0 0.0 3.2359499572803605 0.0 35 0.0 0.0 0.0 3.349500867946616 0.0 36 0.0 0.0 0.0 3.4435744340777226 0.0 37 0.0 0.0 0.0 3.5405595620207846 0.0 38 0.0 0.0 0.0 3.6294123966270058 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTCGAAA 30 2.5273748E-6 44.0 1 TACGATT 30 2.5273748E-6 44.0 13 TGATTCG 40 8.310963E-9 44.0 15 CTACCTG 25 4.4424112E-5 44.0 33 CGTAAAT 35 1.4458237E-7 44.0 16 TTACGCA 25 4.4424112E-5 44.0 1 ATCGCGA 20 7.855975E-4 44.0 1 CGTTTTA 2885 0.0 43.618717 1 CGTTATT 1460 0.0 42.49315 1 CGGTCTA 255 0.0 42.27451 31 GTTTTAT 3315 0.0 41.610863 2 CGACGGT 260 0.0 41.46154 28 CGTTCGA 75 0.0 41.066666 14 TTCGAAT 75 0.0 41.066666 16 ACGGTCT 265 0.0 40.679245 30 CACTCGC 65 0.0 40.615387 22 TCACGAC 275 0.0 40.0 25 ATGCTTG 715 0.0 40.0 36 CACGACG 275 0.0 40.0 26 TATGCCA 275 0.0 40.0 10 >>END_MODULE