##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545695_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 383665 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.96662974209271 31.0 31.0 33.0 30.0 33.0 2 31.127952771297878 31.0 31.0 33.0 30.0 34.0 3 31.056979396087733 31.0 31.0 34.0 28.0 34.0 4 35.022868909074326 35.0 35.0 37.0 32.0 37.0 5 32.74656796945252 35.0 35.0 37.0 28.0 37.0 6 33.935646983696714 35.0 35.0 37.0 28.0 37.0 7 15.386128523581771 0.0 0.0 35.0 0.0 37.0 8 24.932245578825277 17.0 17.0 35.0 17.0 37.0 9 32.62214431861129 32.0 32.0 37.0 27.0 39.0 10 35.42336152633157 37.0 34.0 37.0 32.0 39.0 11 36.40242659611901 37.0 35.0 39.0 32.0 39.0 12 36.3002254571045 37.0 35.0 39.0 32.0 39.0 13 35.96766710541748 37.0 35.0 39.0 31.0 39.0 14 37.015542204788034 39.0 35.0 40.0 31.0 41.0 15 37.35747331656523 39.0 36.0 41.0 32.0 41.0 16 37.4310192485632 39.0 35.0 41.0 32.0 41.0 17 37.37732657396427 39.0 35.0 41.0 32.0 41.0 18 37.296959587139824 39.0 36.0 40.0 32.0 41.0 19 37.22505049978497 39.0 36.0 40.0 32.0 41.0 20 37.31077632830725 39.0 35.0 40.0 32.0 41.0 21 37.14451148788657 39.0 35.0 40.0 32.0 41.0 22 37.18036047072316 39.0 35.0 40.0 32.0 41.0 23 37.14673478164545 39.0 35.0 40.0 32.0 41.0 24 36.96468012458786 39.0 35.0 40.0 32.0 41.0 25 36.697092515606066 38.0 35.0 40.0 31.0 41.0 26 36.55309970938188 38.0 35.0 40.0 31.0 41.0 27 36.45045547547991 38.0 35.0 40.0 31.0 41.0 28 36.3412299792788 38.0 35.0 40.0 30.0 41.0 29 36.32917258545867 38.0 35.0 40.0 30.0 41.0 30 36.08435223437113 38.0 35.0 40.0 30.0 41.0 31 35.932886763191846 38.0 35.0 40.0 30.0 41.0 32 35.81800529107424 38.0 34.0 40.0 29.0 41.0 33 35.591966950334275 38.0 34.0 40.0 28.0 41.0 34 35.41873770085882 38.0 34.0 40.0 27.0 41.0 35 35.232205178997305 38.0 34.0 40.0 26.0 41.0 36 35.014197281482545 38.0 34.0 40.0 25.0 41.0 37 34.869500736319445 38.0 34.0 40.0 24.0 41.0 38 34.75421526592209 38.0 34.0 40.0 24.0 41.0 39 34.67657461587583 38.0 33.0 40.0 23.0 41.0 40 34.525218615198156 38.0 33.0 40.0 23.0 41.0 41 34.34808231139145 37.0 33.0 40.0 23.0 41.0 42 34.30014205100804 37.0 33.0 40.0 23.0 41.0 43 34.208843652665735 37.0 33.0 40.0 23.0 41.0 44 33.98306334953671 37.0 33.0 40.0 22.0 41.0 45 33.892049053210485 37.0 33.0 40.0 22.0 41.0 46 33.873647583178034 37.0 33.0 40.0 22.0 41.0 47 33.796168532443666 36.0 33.0 40.0 22.0 41.0 48 33.743494976085906 36.0 33.0 40.0 22.0 41.0 49 33.608958336048374 36.0 33.0 40.0 20.0 41.0 50 33.47301682457352 36.0 32.0 40.0 20.0 41.0 51 33.28829577886959 36.0 32.0 40.0 20.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 1.0 13 1.0 14 7.0 15 20.0 16 51.0 17 126.0 18 292.0 19 565.0 20 975.0 21 1503.0 22 2379.0 23 3439.0 24 4656.0 25 6113.0 26 7270.0 27 7787.0 28 8337.0 29 9597.0 30 11335.0 31 14516.0 32 19215.0 33 28064.0 34 35906.0 35 38215.0 36 44480.0 37 67381.0 38 59444.0 39 11989.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.886932610480496 24.636336387212804 27.721319380188447 15.755411622118254 2 34.3789503864048 24.309749390744532 28.576753157051073 12.734547065799589 3 31.50222199053862 23.064652756962452 32.65922093493021 12.773904317568713 4 27.57301291491275 27.09473108049992 30.128627839391136 15.2036281651962 5 21.41842492799708 36.06036516231608 28.80898700689404 13.712222902792801 6 20.642748230878503 41.179674976867844 28.157376878266195 10.020199913987463 7 37.2919083054227 56.833696062971605 5.020004430948875 0.854391200656823 8 85.47613152098836 4.054578864373868 8.418281573768782 2.0510080408689872 9 80.79704950933757 5.729738183050317 10.070243571866081 3.4029687357460285 10 48.28457117537435 23.576818318063935 16.326743382899146 11.81186712366257 11 43.408442260826504 21.639711727679096 21.14057836915017 13.811267642344232 12 39.81911302829291 20.508777188432617 25.6455501544316 14.026559628842872 13 22.76360887753639 36.749508034352885 24.64233120039618 15.844551887714541 14 15.51822553529772 41.1014817614325 28.052597969582838 15.327694733686942 15 14.876259236573574 23.786897423533553 45.323133462786544 16.01370987710633 16 15.967315235948027 18.215891467816974 45.86344858144475 19.953344714790248 17 16.153415088684138 18.592522122163867 31.223072211434456 34.03099057771754 18 20.147785177172793 23.43059700519985 34.204579515983994 22.21703830164336 19 29.569285704977 24.06005238945434 26.02218080877849 20.34848109679017 20 31.76416926224701 22.41486713669477 25.569181447356414 20.251782153701797 21 22.91009083445193 27.645471961216167 28.095082949969374 21.34935425436253 22 22.15031342447187 24.576127611327593 25.861884717136043 27.411674247064493 23 21.387668929925844 29.256512843235633 25.30749481969948 24.04832340713904 24 20.283059439875935 24.42391148528013 37.39069240092268 17.90233667392126 25 19.76568099774543 24.74163658399906 34.90310557387304 20.589576844382467 26 17.675576349158774 33.279293133332466 28.185265791771467 20.8598647257373 27 19.77089387877445 31.89709772848709 28.228532704312354 20.1034756884261 28 17.706332347230006 28.58796085126347 36.10467465106277 17.601032150443746 29 17.864543286460847 25.195417877575487 35.927436696076 21.01260213988766 30 19.6900942228246 28.705250674416483 31.58510679890008 20.019548303858837 31 28.287438259940313 26.63964656666623 25.187598556031954 19.8853166173615 32 30.024630862862132 26.176482087237563 26.100634668265283 17.698252381635022 33 27.928531401092098 26.807761979852213 24.791680241877682 20.472026377178008 34 20.570810472677987 27.167711414906233 27.52062346057107 24.740854651844707 35 21.283671953396844 24.781775767922536 30.263380813991375 23.671171464689248 36 28.66797857505897 25.918183832249486 25.369006815841942 20.044830776849594 37 21.239101820598698 31.776940820768118 27.514368003336244 19.469589355296936 38 20.588273624125215 32.38319888444346 24.746849465028085 22.28167802640324 39 21.492969126712104 30.76485996898336 25.443290370505515 22.298880533799018 40 23.86013840199132 25.743031029674324 27.632439758643606 22.764390809690745 41 18.53596236299897 25.269962076290515 28.01428329401952 28.179792266690995 42 22.384893070777892 27.678573755750456 23.99801910520897 25.938514068262673 43 22.64136681740581 26.906806719403647 25.632517951859047 24.8193085113315 44 20.830672591974768 29.679277494689376 28.450601436148727 21.03944847718713 45 18.385310101260213 34.97217624750759 23.919043957619277 22.72346969361292 46 21.834152190061644 31.972163215305017 25.697157676618925 20.496526918014414 47 22.395318832835937 28.774321348051036 25.896550375979043 22.933809443133985 48 23.00209818461418 25.57465497243689 29.223671692752788 22.199575150196136 49 21.30400218941003 25.72426465796984 30.50499784968658 22.46673530293355 50 19.77740998006073 31.596575137163935 26.885955195287554 21.740059687487783 51 19.236834217351074 32.90657213975734 25.03929209075626 22.817301552135326 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 386.0 1 520.5 2 655.0 3 2614.5 4 4574.0 5 3486.5 6 2399.0 7 2407.0 8 2415.0 9 2439.5 10 2464.0 11 2475.0 12 2486.0 13 2407.0 14 2328.0 15 2200.5 16 2073.0 17 1953.0 18 1833.0 19 1791.0 20 1749.0 21 1784.5 22 1820.0 23 1962.0 24 2104.0 25 2542.5 26 3457.5 27 3934.0 28 4673.5 29 5413.0 30 6075.0 31 6737.0 32 7690.0 33 8643.0 34 9019.5 35 9396.0 36 10166.0 37 10936.0 38 14641.0 39 18346.0 40 23771.5 41 29197.0 42 31811.5 43 34426.0 44 33915.0 45 33404.0 46 32576.0 47 31748.0 48 29180.5 49 26613.0 50 25214.5 51 23816.0 52 21914.5 53 20013.0 54 18879.0 55 17745.0 56 17111.0 57 16477.0 58 15669.5 59 14862.0 60 13578.5 61 12295.0 62 10334.5 63 8374.0 64 7064.5 65 5755.0 66 5021.5 67 4288.0 68 3938.5 69 3589.0 70 3221.5 71 2854.0 72 2475.0 73 2096.0 74 1621.0 75 871.0 76 596.0 77 449.5 78 303.0 79 255.0 80 207.0 81 152.0 82 97.0 83 78.5 84 60.0 85 38.5 86 17.0 87 13.0 88 9.0 89 6.5 90 4.0 91 2.5 92 1.0 93 1.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 383665.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 37.40805046874119 #Duplication Level Percentage of deduplicated Percentage of total 1 68.37164811644958 25.57650063371159 2 8.906914961157188 6.663806487755081 3 4.820980643948486 5.410304617129482 4 3.34305925592799 5.002293174629865 5 2.532659274115935 4.737092297312715 6 1.9831767101492468 4.451206467701708 7 1.6070561437135835 4.208178613109682 8 1.3454754788503347 4.026529169382963 9 1.1606458050290254 3.9075747165772667 >10 5.871203647597771 33.42575768294952 >50 0.042712743491240164 1.08418492787094 >100 0.01240047391681166 0.7081863992843695 >500 6.889152176006478E-4 0.17524263155508418 >1k 0.0013778304352012956 0.6231421810296964 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1232 0.3211134713877992 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1186 0.309123845021047 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 680 0.1772379549867723 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.007558677492082937 0.0 2 0.0 0.0 0.0 0.03961789582057264 0.0 3 0.0 0.0 0.0 0.04926172572426466 0.0 4 0.0 0.0 0.0 0.07532613086937823 0.0 5 0.0 0.0 0.0 0.13449233054878604 0.0 6 0.0 0.0 0.0 0.20955781736671314 0.0 7 0.0 0.0 0.0 0.2510002215474437 0.0 8 0.0 0.0 0.0 0.5619485749286487 0.0 9 0.0 0.0 0.0 0.7071273115869313 0.0 10 0.0 0.0 0.0 0.9531752961568034 0.0 11 0.0 0.0 0.0 1.1158171842623121 0.0 12 0.0 0.0 0.0 1.266990734103971 0.0 13 0.0 0.0 0.0 1.3384072042015822 0.0 14 0.0 0.0 0.0 1.362907745037989 0.0 15 0.0 0.0 0.0 1.395488251469381 0.0 16 0.0 0.0 0.0 1.472378246647466 0.0 17 0.0 0.0 0.0 1.559172715780694 0.0 18 0.0 0.0 0.0 1.7095643334679995 0.0 19 0.0 0.0 0.0 1.7666453807357982 0.0 20 0.0 0.0 0.0 1.8255509363637548 0.0 21 0.0 0.0 0.0 1.8961854743070126 0.0 22 0.0 0.0 0.0 1.9712509611249398 0.0 23 0.0 0.0 0.0 2.057784786206717 0.0 24 0.0 0.0 0.0 2.131286408715937 0.0 25 0.0 0.0 0.0 2.194362269167112 0.0 26 0.0 0.0 0.0 2.250661384280557 0.0 27 0.0 0.0 0.0 2.311652092320123 0.0 28 0.0 0.0 0.0 2.362738326404546 0.0 29 0.0 0.0 0.0 2.4239896784955626 0.0 30 0.0 0.0 0.0 2.5102628595258887 0.0 31 0.0 0.0 0.0 2.588456074961229 0.0 32 0.0 0.0 0.0 2.6559628842870735 0.0 33 0.0 0.0 0.0 2.728161286539038 0.0 34 0.0 0.0 0.0 2.8045299936142207 0.0 35 0.0 0.0 0.0 2.9025321569598477 0.0 36 0.0 0.0 0.0 2.9804647283437373 0.0 37 0.0 0.0 0.0 3.062828248602296 0.0 38 0.0 0.0 0.0 3.1420640402434414 0.0 39 0.0 0.0 0.0 3.221821119987489 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGGGTAC 20 7.0274057E-4 45.0 6 CGACGGT 75 0.0 45.0 28 CCGATGT 20 7.0274057E-4 45.0 11 GCGAATA 20 7.0274057E-4 45.0 1 AACCCGA 20 7.0274057E-4 45.0 24 CACGACG 75 0.0 45.0 26 TAACGCC 25 3.8859303E-5 45.0 12 TATGCAC 25 3.8859303E-5 45.0 15 ACGGGAT 40 6.7939254E-9 45.0 5 TAACCGG 20 7.0274057E-4 45.0 16 AACGCCG 25 3.8859303E-5 45.0 13 AGCGCAA 20 7.0274057E-4 45.0 14 ACGCTTG 20 7.0274057E-4 45.0 32 AGCGAAA 40 6.7939254E-9 45.0 1 CGTAAAT 20 7.0274057E-4 45.0 16 CGATGAT 20 7.0274057E-4 45.0 10 CGGTCTA 75 0.0 45.0 31 ACGTAAG 20 7.0274057E-4 45.0 2 CGACTAG 35 1.2091004E-7 45.0 2 CGGTAAG 20 7.0274057E-4 45.0 2 >>END_MODULE