SRR1545691_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545691_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	361632
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1211	0.3348708078931068	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1138	0.31468454119104505	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	518	0.1432395363242191	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTAGGCG	30	2.1613596E-6	45.000004	5
CTCACGA	60	0.0	45.000004	24
CGGTCTA	60	0.0	45.000004	31
TTCATCG	30	2.1613596E-6	45.000004	15
TCGCCGT	20	7.026867E-4	45.0	25
TATCACC	20	7.026867E-4	45.0	44
CAACCCG	25	3.8854858E-5	45.0	23
CGAATAT	20	7.026867E-4	45.0	14
CGTTTTA	775	0.0	44.129032	1
AGGCGAT	275	0.0	43.363636	7
CGTTTTT	960	0.0	42.656254	1
TAAGGCG	75	0.0	42.0	5
AAGGCGA	200	0.0	41.625	6
CGACGGT	65	0.0	41.53846	28
TACGGGC	55	6.002665E-11	40.909092	4
CGTTATT	200	0.0	40.5	1
GTTTTAT	895	0.0	40.47486	2
GCGCGAC	190	0.0	40.263157	9
AGGTACC	90	0.0	40.0	7
GGTACCT	175	0.0	39.857143	8