SRR1545689_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545689_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	449881
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1565	0.34786977000584596	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1474	0.32764219871477124	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	599	0.13314632091597556	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTACGCT	20	7.0287037E-4	45.0	33
CGGGATA	25	3.887008E-5	45.0	6
ACGTAAG	20	7.0287037E-4	45.0	2
CGTTTTA	895	0.0	43.99441	1
CGTTATT	190	0.0	42.63158	1
GCATAAG	80	0.0	42.1875	2
CGGTCTA	70	0.0	41.785713	31
TCACGAC	65	0.0	41.53846	25
TAAGGCC	65	0.0	41.53846	5
ACGACGG	65	0.0	41.53846	27
CGTTTTT	1520	0.0	41.299343	1
GTTTTAT	1060	0.0	41.179245	2
AGGCGAT	385	0.0	40.909092	7
CGCAGTA	95	0.0	40.263157	37
GTTGATC	325	0.0	40.153847	16
CGCATCG	45	1.9237632E-8	40.000004	21
CGCCAGT	45	1.9237632E-8	40.000004	26
GGTACCT	340	0.0	39.705883	8
CAGTAGC	335	0.0	39.626865	27
ATCCTGC	330	0.0	39.545452	20