SRR1545688_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545688_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1167223
Sequences flagged as poor quality	0
Sequence length	50
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6716	0.5753827674745957	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2956	0.25325066418327946	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2648	0.22686324721154397	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA	1214	0.10400754611586645	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AATTCGC	40	8.312782E-9	44.000004	13
ACCGGTC	25	4.442882E-5	44.0	34
TATCGCG	25	4.442882E-5	44.0	32
GCGTAAA	50	2.7284841E-11	44.0	1
CGTTTTA	3955	0.0	43.443745	1
CGTTATT	2200	0.0	43.4	1
TAGCCGT	130	0.0	42.30769	44
GTTTTAT	4330	0.0	41.967667	2
GTTATTT	2470	0.0	40.97166	2
ATTACGG	65	0.0	40.615383	2
CGTTTTT	2015	0.0	39.960297	1
AGGCGAT	945	0.0	39.57672	7
GGTACCT	925	0.0	39.243244	8
TCGTTAA	45	2.3510438E-8	39.11111	1
CGTAGGT	45	2.3510438E-8	39.11111	4
AGGTACC	540	0.0	38.703705	7
ATAGGCG	240	0.0	38.500004	5
CGTAAAG	120	0.0	38.500004	2
TCGAATA	40	4.124613E-7	38.500004	1
TGCGTAA	40	4.124613E-7	38.500004	1