SRR1545687_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545687_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	442689
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1830	0.41338275855058515	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1640	0.3704632371710162	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	475	0.10729880344892237	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGCGTAA	20	7.0285815E-4	45.0	1
CGTAGTG	20	7.0285815E-4	45.0	16
ATGCGAA	20	7.0285815E-4	45.0	1
CACGTGA	25	3.8869053E-5	45.0	43
AGTACGG	20	7.0285815E-4	45.0	2
GTTACAC	30	2.1624674E-6	44.999996	33
AACACGT	30	2.1624674E-6	44.999996	41
CGTTTTA	970	0.0	43.840206	1
AGGCGAT	450	0.0	43.0	7
TATCCTA	100	0.0	42.75	24
CGTTTTT	1470	0.0	42.704082	1
GTACGGG	80	0.0	42.1875	3
CGTTATT	235	0.0	42.12766	1
CGAAAAG	60	3.6379788E-12	41.249996	2
GTAAGGC	95	0.0	40.263157	4
TCACGAC	45	1.9237632E-8	40.0	25
TAGGCGA	135	0.0	40.0	6
CGACGGT	40	3.4518052E-7	39.375	28
CACGACG	40	3.4518052E-7	39.375	26
GTTTTAT	1155	0.0	39.35065	2