SRR1545686_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545686_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1340176
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ACTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTGC	4870	0.3633851076276549	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3716	0.27727701436229274	No Hit
ATGCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCT	2188	0.1632621387041702	No Hit
ATCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTG	1884	0.14057855087689974	No Hit
ATGTCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTC	1703	0.1270728620718473	No Hit
ATGCCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTC	1611	0.12020809207148912	No Hit
ATTGCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTC	1512	0.11282100261458196	No Hit
CTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTGCT	1509	0.11259715141891811	No Hit
ATATCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTC	1409	0.10513544489678966	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGATCTA	25	3.8911527E-5	45.000004	40
CGAACTA	25	3.8911527E-5	45.000004	18
CGAAACG	25	3.8911527E-5	45.000004	42
TCCGATA	25	3.8911527E-5	45.000004	2
GAACTAC	25	3.8911527E-5	45.000004	30
ATTCGTT	230	0.0	45.000004	1
CGTCTAG	25	3.8911527E-5	45.000004	3
CGTTAAT	25	3.8911527E-5	45.000004	24
ATCCGAT	25	3.8911527E-5	45.000004	1
TCTACGA	25	3.8911527E-5	45.000004	25
ATCCCGC	25	3.8911527E-5	45.000004	4
AACGCGC	25	3.8911527E-5	45.000004	1
TCGTAAT	25	3.8911527E-5	45.000004	2
GTGCGAC	25	3.8911527E-5	45.000004	14
CTTACCG	25	3.8911527E-5	45.000004	12
AGCGTAA	20	7.033706E-4	45.0	26
CGTATGA	20	7.033706E-4	45.0	25
AGGAACG	20	7.033706E-4	45.0	33
CCCACGT	20	7.033706E-4	45.0	22
CATTACG	20	7.033706E-4	45.0	22