##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545685_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1102809 Sequences flagged as poor quality 0 Sequence length 52 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.53777580705272 33.0 31.0 34.0 31.0 34.0 2 32.949047387172214 34.0 31.0 34.0 31.0 34.0 3 33.033008435730935 34.0 33.0 34.0 31.0 34.0 4 36.42077639917701 37.0 37.0 37.0 35.0 37.0 5 36.393274810053235 37.0 37.0 37.0 35.0 37.0 6 36.40652370446741 37.0 37.0 37.0 35.0 37.0 7 36.480697926839554 37.0 37.0 37.0 35.0 37.0 8 36.51618185923401 37.0 37.0 37.0 35.0 37.0 9 38.31624515215237 39.0 39.0 39.0 37.0 39.0 10 38.059667630568846 39.0 39.0 39.0 35.0 39.0 11 37.89232949676689 39.0 38.0 39.0 35.0 39.0 12 37.496057794232726 39.0 37.0 39.0 35.0 39.0 13 37.41213664378873 39.0 37.0 39.0 35.0 39.0 14 38.738787949681225 41.0 38.0 41.0 35.0 41.0 15 38.776188805133074 41.0 38.0 41.0 35.0 41.0 16 38.83810070465511 41.0 38.0 41.0 35.0 41.0 17 38.78807844332065 40.0 38.0 41.0 35.0 41.0 18 38.75284115381721 40.0 38.0 41.0 35.0 41.0 19 38.73677490843836 40.0 38.0 41.0 35.0 41.0 20 38.667757517394215 40.0 37.0 41.0 35.0 41.0 21 38.600621685169415 40.0 37.0 41.0 35.0 41.0 22 38.70331580536612 40.0 37.0 41.0 35.0 41.0 23 38.688778383201445 40.0 37.0 41.0 35.0 41.0 24 38.63498030937361 40.0 37.0 41.0 35.0 41.0 25 38.574219107751205 40.0 37.0 41.0 35.0 41.0 26 38.445553128420244 40.0 36.0 41.0 35.0 41.0 27 38.358945202659754 40.0 36.0 41.0 35.0 41.0 28 38.29783851963486 40.0 36.0 41.0 35.0 41.0 29 38.27055909046807 40.0 36.0 41.0 35.0 41.0 30 38.22426458253424 40.0 36.0 41.0 35.0 41.0 31 38.16931943790811 40.0 36.0 41.0 34.0 41.0 32 38.091204369931695 40.0 35.0 41.0 34.0 41.0 33 38.019157442494574 40.0 35.0 41.0 34.0 41.0 34 37.90324163114374 40.0 35.0 41.0 34.0 41.0 35 37.81987542720453 40.0 35.0 41.0 34.0 41.0 36 37.74832631942612 40.0 35.0 41.0 34.0 41.0 37 37.63679839391953 40.0 35.0 41.0 33.0 41.0 38 37.57750616833921 40.0 35.0 41.0 33.0 41.0 39 37.48771002050219 40.0 35.0 41.0 33.0 41.0 40 37.30374253383859 39.0 35.0 41.0 33.0 41.0 41 37.17154375780394 39.0 35.0 41.0 33.0 41.0 42 37.09695151200253 39.0 35.0 41.0 33.0 41.0 43 37.026838736354165 39.0 35.0 41.0 33.0 41.0 44 36.87689980767295 39.0 35.0 41.0 33.0 41.0 45 36.78748178515047 38.0 35.0 41.0 32.0 41.0 46 36.77354374148198 38.0 35.0 41.0 33.0 41.0 47 36.730458311457376 38.0 35.0 41.0 33.0 41.0 48 36.618130610105645 38.0 35.0 40.0 32.0 41.0 49 36.551021981140885 38.0 35.0 40.0 32.0 41.0 50 36.43721260889238 37.0 35.0 40.0 32.0 41.0 51 36.32826445921279 37.0 35.0 40.0 32.0 41.0 52 35.98075641384864 37.0 35.0 40.0 31.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 2.0 10 1.0 11 3.0 12 5.0 13 10.0 14 19.0 15 25.0 16 55.0 17 107.0 18 203.0 19 357.0 20 540.0 21 860.0 22 1270.0 23 1879.0 24 2552.0 25 3321.0 26 4170.0 27 5209.0 28 6650.0 29 8503.0 30 10895.0 31 14234.0 32 19036.0 33 26780.0 34 60035.0 35 128523.0 36 70240.0 37 101018.0 38 168944.0 39 466606.0 40 756.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 27.96885045370504 13.632279025651767 46.72268724683966 11.676183273803533 2 25.01249083023443 13.38345987383128 49.721393278437155 11.882656017497137 3 25.1555799780379 14.077415037418085 45.751712218525604 15.015292766018412 4 24.06472925048671 14.676430823469886 46.91038974110657 14.348450184936828 5 23.293335473323122 17.099606550182305 44.93670254776666 14.670355428727913 6 25.73328654372607 20.421033923372043 42.96773058616678 10.87794894673511 7 87.43390741279768 2.6947549394319417 6.1190106355679 3.7523270122024757 8 88.54171483910632 2.8395669603711973 5.852690719789193 2.766027480733291 9 81.43277757073074 4.588736580858517 7.982978013418461 5.995507834992279 10 46.01386096776504 22.05821679003345 13.168191409391836 18.75973083280967 11 36.35942398003643 22.302502065180825 22.66403339109492 18.674040563687818 12 30.65762067592847 23.218254475616355 25.347000251176766 20.777124597278405 13 24.042603932321917 23.974595782225208 31.91286977164677 20.06993051380611 14 18.41606298098764 32.386297173853315 28.74677301327791 20.450866831881132 15 17.969838838819776 22.998814844637646 36.71723752707858 22.314108789463997 16 21.54806498677468 20.87324278274842 35.39660992973398 22.18208230074292 17 22.565829622355277 21.073096066499275 27.371648218322488 28.989426092822963 18 22.51133242474445 21.969443484773883 29.83481273729177 25.6844113531899 19 26.91626564527493 24.488465364355932 26.381268197847497 22.21400079252164 20 29.03712247542412 21.825447561635787 24.636995164167143 24.50043479877295 21 26.41309601209276 24.187687985861558 26.864579451201433 22.534636550844255 22 28.896209588423744 21.896901458004063 22.807394571498783 26.399494382073414 23 28.141047089749904 24.071620743029847 22.22352193353518 25.563810233685068 24 27.449993607233893 19.68881284066416 27.799555498730967 25.061638053370984 25 30.93192021465186 21.63076289729228 24.061374181748608 23.375942706307256 26 24.84455603826229 25.92461613933147 23.321354831162967 25.90947299124327 27 25.294679314369034 23.884734346564095 24.352177031562128 26.468409307504743 28 23.895162262912255 23.404506129347872 27.34127124461262 25.35906036312725 29 23.561468939771075 22.48666813564271 27.943007356668293 26.008855567917927 30 26.00142001017402 24.245993639877803 26.325864224902045 23.426722125046133 31 25.18024426713964 26.51909804871016 21.908598859820692 26.392058824329506 32 28.091809189079886 24.88391008778492 24.715884618279322 22.308396104855873 33 25.94728552269704 24.397787830893655 23.70818518891304 25.946741457496262 34 23.108988047794316 28.31097678745821 24.38527433127586 24.194760833471616 35 24.260048657564457 24.177894812247633 27.156379753883037 24.405676776304873 36 25.044137289412767 25.61032780835122 23.16484540840708 26.18068949382894 37 25.563991588751993 28.38950353143654 24.55964722812382 21.486857651687643 38 22.960004860315795 25.906117922505167 27.213869310098122 23.92000790708092 39 23.356084326479017 27.849428142135217 23.56047148690299 25.23401604448277 40 26.372472477101656 23.626756763863916 26.702538698904345 23.298232060130086 41 22.523573891761856 24.39760647582673 26.72266911133297 26.356150521078447 42 23.00851734071811 25.45708277679997 24.185239692458076 27.34916019002384 43 23.340397113190043 21.553324283715494 27.419797988590954 27.686480614503512 44 26.200094485989865 23.054762882783873 24.52591518567585 26.21922744555041 45 22.38275168229494 24.170005866836412 26.491532078537627 26.95571037233102 46 23.215715504679412 25.784065962464943 24.0952875792635 26.904930953592142 47 23.92091468241554 23.73130795994592 28.47392431508992 23.873853042548618 48 22.514415460882166 21.767685972820317 30.836346094382616 24.8815524719149 49 21.969534162307344 22.95465488584152 26.428511192781347 28.647299759069796 50 21.010981956077615 24.638083294568688 28.864019064044633 25.486915685309057 51 23.07371448727749 25.03878731493849 25.463883591809644 26.423614605974382 52 22.83876899807673 23.838488804498333 26.677421022135295 26.64532117528965 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 124.0 1 93.0 2 62.0 3 53.0 4 44.0 5 68.0 6 92.0 7 135.0 8 178.0 9 285.0 10 392.0 11 508.0 12 624.0 13 710.5 14 806.5 15 816.0 16 681.5 17 547.0 18 665.0 19 783.0 20 968.0 21 1153.0 22 1449.0 23 1745.0 24 2411.5 25 3078.0 26 4021.0 27 4964.0 28 6176.0 29 7388.0 30 8231.0 31 9074.0 32 11841.0 33 14608.0 34 16894.5 35 19181.0 36 19778.0 37 20375.0 38 24942.5 39 35802.0 40 42094.0 41 51769.5 42 61445.0 43 70432.0 44 79419.0 45 91813.5 46 104208.0 47 104984.0 48 105760.0 49 95379.0 50 84998.0 51 76134.5 52 67271.0 53 66008.5 54 64746.0 55 63269.0 56 61792.0 57 63833.5 58 65875.0 59 64002.0 60 62129.0 61 58428.5 62 54728.0 63 48102.5 64 35396.5 65 29316.0 66 24414.5 67 19513.0 68 16832.0 69 14151.0 70 11889.5 71 9628.0 72 8979.5 73 8331.0 74 6566.5 75 4802.0 76 3595.5 77 2389.0 78 1844.0 79 1299.0 80 1271.0 81 1243.0 82 813.0 83 383.0 84 281.0 85 179.0 86 111.5 87 44.0 88 31.5 89 21.0 90 23.0 91 14.5 92 6.0 93 5.0 94 4.0 95 2.5 96 1.0 97 0.5 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 1102809.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 17.33320974141667 #Duplication Level Percentage of deduplicated Percentage of total 1 69.79387691120631 12.097519071685573 2 11.771564750006478 4.080780015930588 3 4.8543174143394445 2.524227056824711 4 2.598171776252293 1.8013862536804037 5 1.5047603448116769 1.3041163333593633 6 0.9781122209524574 1.0172294565847098 7 0.6340654956053784 0.7693273157586336 8 0.5230360756900833 0.7252715201810959 9 0.4047153376194707 0.6313514249273892 >10 3.6800483500441774 15.307404086696833 >50 1.8211514731812768 23.282240331387037 >100 1.4236093483190317 33.390660595748884 >500 0.007332792816948655 0.8426785419276583 >1k 0.005237709154963325 2.225807995307089 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTGC 3458 0.3135629107125531 No Hit GCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTGCT 3289 0.29823840755742836 No Hit CTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTGCTT 3286 0.29796637495704154 Illumina Single End Adapter 1 (95% over 21bp) TGCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTGC 2737 0.24818440908625158 No Hit GCCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTGC 2457 0.22279469971681407 No Hit TTCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTGC 2439 0.2211625041144931 No Hit ATCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTGC 2124 0.19259908107387588 No Hit GGCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTGC 2000 0.18135506692455355 No Hit AGCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTGC 1505 0.13646968786072655 No Hit ACCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTGC 1222 0.11080794589090225 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.3135629107125531 0.0 2 0.0 0.0 0.0 0.7757462987697779 0.0 3 0.0 0.0 0.0 2.8438288044439246 0.0 4 0.0 0.0 0.0 3.326958702730935 0.0 5 0.0 0.0 0.0 4.101888903699552 0.0 6 0.0 0.0 0.0 6.408725354979874 0.0 7 0.0 0.0 0.0 6.690460451447168 0.0 8 0.0 0.0 0.0 7.259099263789106 0.0 9 0.0 0.0 0.0 7.659440574025058 0.0 10 0.0 0.0 0.0 8.93155569096734 0.0 11 0.0 0.0 0.0 9.967999898441162 0.0 12 0.0 0.0 0.0 10.387836878371504 0.0 13 0.0 0.0 0.0 10.59403758946472 0.0 14 0.0 0.0 0.0 10.717359034973418 0.0 15 0.0 0.0 0.0 10.915217412988106 0.0 16 0.0 0.0 0.0 11.374680475041462 0.0 17 0.0 0.0 0.0 11.948397229257287 0.0 18 0.0 0.0 0.0 12.594656010242934 0.0 19 0.0 0.0 0.0 12.984660081664186 0.0 20 0.0 0.0 0.0 13.43723165117441 0.0 21 0.0 0.0 0.0 14.114320793537232 0.0 22 0.0 0.0 0.0 14.677337598804508 0.0 23 0.0 0.0 0.0 15.255044164492674 0.0 24 9.067753346227678E-5 0.0 0.0 15.743070649586647 0.0 25 9.067753346227678E-5 0.0 0.0 16.14939667703111 0.0 26 9.067753346227678E-5 0.0 0.0 16.52616182856687 0.0 27 9.067753346227678E-5 0.0 0.0 16.87663049539857 0.0 28 9.067753346227678E-5 0.0 0.0 17.22329070582485 0.0 29 9.067753346227678E-5 0.0 0.0 17.59153216921516 0.0 30 9.067753346227678E-5 0.0 0.0 17.97029222648709 0.0 31 9.067753346227678E-5 0.0 0.0 18.34034724054664 0.0 32 9.067753346227678E-5 0.0 0.0 18.718381877550872 0.0 33 9.067753346227678E-5 0.0 0.0 19.093968221151624 0.0 34 9.067753346227678E-5 0.0 0.0 19.46538339821311 0.0 35 9.067753346227678E-5 0.0 0.0 19.860012023840937 0.0 36 9.067753346227678E-5 0.0 0.0 20.239588178914026 0.0 37 9.067753346227678E-5 0.0 0.0 20.624604985994853 0.0 38 9.067753346227678E-5 0.0 0.0 21.011344666211464 0.0 39 9.067753346227678E-5 0.0 0.0 21.414315624917823 0.0 40 9.067753346227678E-5 0.0 0.0 21.820732329895748 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGGTTGA 35 1.0195254E-7 46.000004 15 TAACGCA 35 1.0195254E-7 46.000004 15 GCACAAT 35 1.0195254E-7 46.000004 38 CTCGATT 35 1.0195254E-7 46.000004 8 TAGTGCG 55 1.8189894E-12 46.000004 1 TATCACG 20 6.311342E-4 46.0 13 TCGTTTA 25 3.4170655E-5 46.0 46 AGGTAAC 25 3.4170655E-5 46.0 20 CGAACTA 25 3.4170655E-5 46.0 16 CAAACGT 20 6.311342E-4 46.0 14 ATCTAGA 25 3.4170655E-5 46.0 13 GGTAACG 25 3.4170655E-5 46.0 1 ACGCATC 20 6.311342E-4 46.0 39 CTATCGC 25 3.4170655E-5 46.0 21 CGTGCAA 30 1.8613337E-6 46.0 34 GCGAAAG 30 1.8613337E-6 46.0 1 ATTACGC 25 3.4170655E-5 46.0 42 TAGCGAT 20 6.311342E-4 46.0 20 CCAATCC 25 3.4170655E-5 46.0 46 CAATTCG 30 1.8613337E-6 46.0 1 >>END_MODULE