SRR1545684_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545684_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	934677
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ACTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCTTCTGC	7184	0.768607765035408	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3024	0.32353422626212053	No Hit
CTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCTTCTGCT	2791	0.29860582853755896	No Hit
ATCTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCTTCTG	2775	0.2968940072345848	No Hit
ATGCTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCTTCT	2528	0.27046776586992083	No Hit
CCTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCTTCTGC	2227	0.23826412760771903	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	2222	0.2377291834505396	No Hit
ATGCCTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCTTC	2126	0.22745825563269448	No Hit
ATTGCTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCTTC	2027	0.21686636132054174	No Hit
ATATCTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCTTC	1666	0.17824339317218676	No Hit
ATGTCTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCTTC	1649	0.17642458303777667	No Hit
ATGGCTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCTTC	1585	0.16957729782587996	No Hit
ATTTCTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCTTC	1440	0.15406391726767643	No Hit
ATACCTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCTTC	1198	0.12817262006019192	No Hit
ATAGCTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCTTC	1095	0.1171527704222956	No Hit
ATTTTTTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTT	1042	0.11148236235619363	No Hit
ATTGTTTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTT	1017	0.10880764157029647	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCAACGA	35	1.2116107E-7	45.000004	11
TACGGTA	35	1.2116107E-7	45.000004	25
AGAACCG	35	1.2116107E-7	45.000004	30
GTAATAC	35	1.2116107E-7	45.000004	24
GTTACCG	35	1.2116107E-7	45.000004	18
TACGCTA	35	1.2116107E-7	45.000004	2
CCCGTAT	35	1.2116107E-7	45.000004	41
TGTTACG	35	1.2116107E-7	45.000004	3
CTCGCTA	35	1.2116107E-7	45.000004	42
TCTCCGA	35	1.2116107E-7	45.000004	24
ATGCGTC	70	0.0	45.000004	1
GCGTGCA	35	1.2116107E-7	45.000004	11
CGGTATG	70	0.0	45.000004	3
CGACTGA	35	1.2116107E-7	45.000004	25
CGGTAAC	35	1.2116107E-7	45.000004	27
CGTCCGG	70	0.0	45.000004	4
CATCAGG	35	1.2116107E-7	45.000004	20
CGATAGG	35	1.2116107E-7	45.000004	4
TAGTCAG	35	1.2116107E-7	45.000004	34
TCGCGGT	35	1.2116107E-7	45.000004	13