SRR1545682_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545682_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2647909
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ACTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTTCTGC	6847	0.25858139384699397	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5888	0.22236413713613268	No Hit
ATGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAA	4412	0.1666220402589364	No Hit
ATGCTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTTCT	3606	0.13618292773656498	No Hit
GGGACTGTCTAGGGCACTCAGTGCCTCAAGTGGCAGGCAGCATAGAGAACA	3371	0.12730800038823084	No Hit
ATGCCTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTTC	3069	0.11590277460441427	No Hit
ATCTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTTCTG	2960	0.11178631894071889	No Hit
ATGTCTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTTC	2816	0.10634806558684608	No Hit
ATGGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTG	2787	0.10525286178641335	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACTATCG	35	1.2127384E-7	45.0	3
CGTCGGT	20	7.0349546E-4	45.0	36
CCGCGTA	25	3.89219E-5	45.0	36
CGTCCTA	20	7.0349546E-4	45.0	43
ATCGCTA	130	0.0	43.269234	1
ATTACGC	140	0.0	41.785713	1
CGCGTAA	95	0.0	40.263157	33
CGTAATC	40	3.4605E-7	39.375	45
TCGTTGC	180	0.0	38.75	2
CGAATCC	35	6.2513755E-6	38.571426	39
CGTTTTT	3180	0.0	38.490562	1
TTCGCGA	65	9.094947E-12	38.076927	2
ATCTCGT	210	0.0	37.500004	1
CGGTAAG	60	1.5643309E-10	37.499996	3
ATGTTTT	5145	0.0	37.478134	1
ATTAGTT	1655	0.0	36.570995	1
AACGTCC	25	0.0021076042	36.0	13
ACGATTG	50	4.883077E-8	36.0	3
TTACGCG	50	4.883077E-8	36.0	3
TAGGCGT	25	0.0021076042	36.0	36