##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545682_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2647909 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.847695672321066 31.0 31.0 34.0 31.0 34.0 2 32.508701016537955 33.0 31.0 34.0 31.0 34.0 3 32.502234404581124 34.0 31.0 34.0 31.0 34.0 4 35.98514941412262 37.0 35.0 37.0 35.0 37.0 5 35.761806391382784 37.0 35.0 37.0 35.0 37.0 6 35.77363950196174 37.0 35.0 37.0 35.0 37.0 7 35.74315922488273 37.0 35.0 37.0 33.0 37.0 8 35.70367712787713 37.0 35.0 37.0 33.0 37.0 9 37.851653134605456 39.0 38.0 39.0 35.0 39.0 10 37.79744734430073 39.0 38.0 39.0 35.0 39.0 11 37.633442085811865 39.0 37.0 39.0 35.0 39.0 12 37.18103039039484 39.0 37.0 39.0 33.0 39.0 13 36.95357959809042 39.0 37.0 39.0 33.0 39.0 14 37.69591062230613 40.0 36.0 41.0 33.0 41.0 15 37.61297008318639 40.0 36.0 41.0 33.0 41.0 16 37.44525359443999 40.0 36.0 41.0 32.0 41.0 17 37.56245701797154 40.0 36.0 41.0 32.0 41.0 18 37.65220217160031 40.0 36.0 41.0 33.0 41.0 19 37.64296771528024 40.0 36.0 41.0 33.0 41.0 20 37.60371258982087 40.0 35.0 41.0 32.0 41.0 21 37.59382289950297 40.0 35.0 41.0 32.0 41.0 22 37.498369468135046 40.0 35.0 41.0 32.0 41.0 23 37.45352276078974 40.0 35.0 41.0 32.0 41.0 24 37.473295721265345 40.0 35.0 41.0 32.0 41.0 25 37.42047593025289 39.0 35.0 41.0 32.0 41.0 26 37.33033537028652 39.0 35.0 41.0 32.0 41.0 27 37.241153680130246 39.0 35.0 41.0 32.0 41.0 28 37.15685546595446 39.0 35.0 41.0 32.0 41.0 29 37.105031177430945 39.0 35.0 41.0 31.0 41.0 30 37.02941150923238 39.0 35.0 41.0 31.0 41.0 31 36.906547392678526 39.0 35.0 41.0 31.0 41.0 32 36.776681902588045 39.0 35.0 41.0 31.0 41.0 33 36.65295899519206 39.0 35.0 41.0 30.0 41.0 34 36.597319243221726 39.0 35.0 41.0 30.0 41.0 35 36.50792644309151 39.0 35.0 41.0 30.0 41.0 36 36.379907315545964 39.0 35.0 41.0 30.0 41.0 37 36.25163817940874 38.0 35.0 41.0 30.0 41.0 38 36.19312144035161 38.0 35.0 41.0 30.0 41.0 39 36.13441700602249 38.0 35.0 41.0 30.0 41.0 40 36.033648814970604 38.0 35.0 40.0 30.0 41.0 41 35.95468008908161 38.0 35.0 40.0 29.0 41.0 42 35.81782191155361 38.0 35.0 40.0 29.0 41.0 43 35.6994443540167 38.0 35.0 40.0 29.0 41.0 44 35.63102130775642 38.0 34.0 40.0 29.0 41.0 45 35.61152592479576 38.0 34.0 40.0 29.0 41.0 46 35.56480075410447 37.0 34.0 40.0 29.0 41.0 47 35.4919342016663 37.0 34.0 40.0 29.0 41.0 48 35.43094683389799 37.0 34.0 40.0 29.0 41.0 49 35.3904526175182 37.0 34.0 40.0 28.0 41.0 50 35.278663654982104 37.0 34.0 40.0 28.0 41.0 51 35.07306557740466 36.0 34.0 40.0 28.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 4.0 9 16.0 10 24.0 11 26.0 12 63.0 13 55.0 14 77.0 15 109.0 16 211.0 17 425.0 18 856.0 19 1589.0 20 2808.0 21 4520.0 22 6691.0 23 9744.0 24 13654.0 25 19121.0 26 25445.0 27 31293.0 28 36862.0 29 44255.0 30 54316.0 31 66636.0 32 83146.0 33 108114.0 34 176447.0 35 264794.0 36 199174.0 37 280425.0 38 426014.0 39 790650.0 40 345.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 2.3223230103451438 90.88669587965448 3.5061250216680406 3.2848560883323406 2 3.4943421394013163 2.8404677048946922 90.49918256254274 3.1660075931612455 3 30.157569614363634 15.775088947543136 40.86843618870588 13.198905249387346 4 27.63761896651282 15.951945478488874 42.177053667629814 14.233381887368484 5 25.49706202139122 14.474477786056847 44.92450458078431 15.103955611767624 6 24.172167548053956 14.460089074058057 45.92480330706229 15.442940070825697 7 23.835146902707006 16.922333811320556 43.806603625728826 15.43591566024361 8 26.444639902655265 19.420493680107587 42.324301930315585 11.810564486921567 9 81.65031351152928 4.439691847416206 9.581144971371751 4.328849669682757 10 82.11422673513327 4.39456189770872 9.361953148692043 4.129258218465967 11 76.01545219265465 7.02762066219043 10.513729890264356 6.443197254890556 12 43.8235226361631 21.569585661742906 17.312679552054092 17.2942121500399 13 33.938590789940285 23.904031445189393 23.725324397477408 18.43205336739291 14 29.239713298304437 22.165263232233436 28.406791925251206 20.18823154421092 15 25.099993995261922 23.267227083710203 32.41089478528152 19.221884135746357 16 20.167045015519793 27.156069185157044 33.223573770850884 19.45331202847228 17 20.296958845640088 22.204879397290465 37.20275130300928 20.295410454060168 18 25.949154597080188 20.715855416481457 32.50058819997213 20.834401786466227 19 25.587284155157903 21.37747180888769 28.763450707709364 24.271793328245042 20 25.849453285592517 21.434497937806775 30.878062652455203 21.837986124145505 21 27.35713349665717 24.047238783508043 27.60838835473576 20.98723936509903 22 25.880496648487544 25.21884249043302 27.070983179557906 21.829677681521535 23 26.9956029455695 23.627322540162822 29.238995750986913 20.138078763280763 24 28.191678792586906 21.14891410543187 27.962252479220396 22.697154622760827 25 27.54894522432606 22.733938364196053 26.72448335648997 22.99263305498792 26 26.75771712698586 22.526907080265975 28.09552745203857 22.619848340709595 27 28.765867709199977 22.879185047522405 25.444341176377282 22.910606066900336 28 23.621091208194844 25.06226611261943 25.75054505271896 25.56609762646677 29 23.010458440981164 24.200038596492554 28.309885271737055 24.479617690789222 30 23.262393080728984 24.88816647399892 27.790041123014426 24.059399322257676 31 23.820342768577017 24.735291129717826 27.801106457963627 23.643259643741533 32 25.14614361747326 25.55763812124964 27.467182595776517 21.82903566550059 33 26.28194548981857 25.79408884519823 26.267556777819784 21.65640888716342 34 28.012254197557397 24.031905930301985 25.13443626650312 22.821403605637506 35 28.093601403975743 24.698469622634313 25.055166170740762 22.152762802649185 36 24.38063392661908 25.51873950351013 27.74449575117574 22.356130818695053 37 24.092935217939893 26.499097967490577 27.573908317846268 21.834058496723262 38 25.751526959574516 27.653669367036404 24.3781036281836 22.21670004520548 39 26.07600940968893 27.22212130401762 25.015738833925184 21.686130452368264 40 26.16728898160775 25.25777887382081 26.600460967503036 21.9744711770684 41 23.388114923889 26.407893926868333 24.238635089045736 25.96535606019693 42 26.130958427952017 23.49559595892457 27.32163378726384 23.051811825859573 43 23.38127934154837 24.59623801271116 26.84121697535678 25.18126567038369 44 22.522941687195445 25.46322400052268 26.92732265345977 25.086511658822115 45 22.443822654026253 23.40012440004547 28.206180801530568 25.949872144397713 46 25.00365382647213 23.930693992882688 26.695781463788975 24.369870716856205 47 22.258317789621923 24.38297539681311 26.891936241011305 26.466770572553667 48 22.089580873058704 24.946589931904757 26.58984882033333 26.37398037470321 49 22.386607696865717 25.46873778517313 28.683123173794872 23.461531344166282 50 22.674042046006868 25.710362402937566 28.274687687530047 23.34090786352552 51 23.451259087831193 24.321190796209386 27.14810063336769 25.079449482591738 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 745.0 1 1772.5 2 2800.0 3 6404.0 4 10008.0 5 6910.0 6 3812.0 7 3989.5 8 4167.0 9 4438.5 10 4710.0 11 4848.0 12 4986.0 13 5057.0 14 5128.0 15 5221.5 16 5315.0 17 5387.0 18 5459.0 19 7097.5 20 8736.0 21 9466.5 22 10197.0 23 13237.5 24 16278.0 25 17257.5 26 23327.0 27 28417.0 28 31327.5 29 34238.0 30 40830.0 31 47422.0 32 51396.0 33 55370.0 34 65743.0 35 76116.0 36 83073.5 37 90031.0 38 101867.0 39 113703.0 40 127960.5 41 142218.0 42 161858.5 43 181499.0 44 202018.5 45 222538.0 46 221742.5 47 220947.0 48 200969.0 49 180991.0 50 174024.5 51 167058.0 52 167739.0 53 168420.0 54 172717.0 55 177014.0 56 169020.5 57 161027.0 58 149904.5 59 138782.0 60 123684.0 61 108586.0 62 93944.5 63 79303.0 64 66571.0 65 53839.0 66 45974.0 67 38109.0 68 32648.5 69 27188.0 70 20694.5 71 14201.0 72 11783.0 73 9365.0 74 7604.0 75 4223.0 76 2603.0 77 2121.5 78 1640.0 79 1082.0 80 524.0 81 371.5 82 219.0 83 146.5 84 74.0 85 49.0 86 24.0 87 16.5 88 9.0 89 7.5 90 6.0 91 4.5 92 3.0 93 3.0 94 3.0 95 1.5 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2647909.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 16.803774646601426 #Duplication Level Percentage of deduplicated Percentage of total 1 72.92284202258631 12.25379003937257 2 10.189602663474032 3.4244757379085464 3 3.981361096885752 2.0070568397644215 4 2.142971893928583 1.4404006711830626 5 1.3403965399441582 1.1261860697152963 6 0.8741271840439286 0.8813181727885481 7 0.6601727035750692 0.7765375337099147 8 0.49048393427588877 0.65935851994804 9 0.3836682174102426 0.5802366837982498 >10 3.737934407195746 14.57787301426485 >50 1.7467564416988162 21.533732575147553 >100 1.5192645647019234 37.85814991285071 >500 0.005435650580610245 0.6398328291367705 >1k 0.004529708817175204 1.7563814575697099 >5k 4.5297088171752036E-4 0.48466994284182563 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source ACTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTTCTGC 6847 0.25858139384699397 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5888 0.22236413713613268 No Hit ATGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAA 4412 0.1666220402589364 No Hit ATGCTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTTCT 3606 0.13618292773656498 No Hit GGGACTGTCTAGGGCACTCAGTGCCTCAAGTGGCAGGCAGCATAGAGAACA 3371 0.12730800038823084 No Hit ATGCCTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTTC 3069 0.11590277460441427 No Hit ATCTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTTCTG 2960 0.11178631894071889 No Hit ATGTCTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTTC 2816 0.10634806558684608 No Hit ATGGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTG 2787 0.10525286178641335 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 3.776564829078341E-5 0.0 0.0 0.10132523436417189 0.0 2 3.776564829078341E-5 0.0 0.0 0.45703987561506076 0.0 3 3.776564829078341E-5 0.0 0.0 0.6174683495543087 0.0 4 3.776564829078341E-5 0.0 0.0 0.8661929091974082 0.0 5 3.776564829078341E-5 0.0 0.0 1.8310674573786334 0.0 6 7.553129658156682E-5 0.0 0.0 2.063212897422079 0.0 7 7.553129658156682E-5 0.0 0.0 2.454540545011177 0.0 8 7.553129658156682E-5 0.0 0.0 3.6518248927738832 0.0 9 7.553129658156682E-5 0.0 0.0 3.823054342124295 0.0 10 7.553129658156682E-5 0.0 0.0 4.104030765407724 0.0 11 7.553129658156682E-5 0.0 0.0 4.332475171918673 0.0 12 7.553129658156682E-5 0.0 0.0 5.00583668094334 0.0 13 1.1329694487235022E-4 0.0 0.0 5.581649520432915 0.0 14 1.1329694487235022E-4 0.0 0.0 5.809036488791722 0.0 15 1.1329694487235022E-4 0.0 0.0 5.941782742533825 0.0 16 1.1329694487235022E-4 0.0 0.0 6.067693413935298 0.0 17 1.5106259316313364E-4 0.0 0.0 6.1933019601504435 0.0 18 1.8882824145391704E-4 0.0 0.0 6.445425428139713 0.0 19 1.8882824145391704E-4 0.0 0.0 6.766584501204536 0.0 20 2.2659388974470045E-4 0.0 0.0 7.115765685301119 0.0 21 3.021251863262673E-4 0.0 0.0 7.361997712157026 0.0 22 3.021251863262673E-4 0.0 0.0 7.652151187975115 0.0 23 3.398908346170507E-4 0.0 0.0 8.07799663810199 0.0 24 3.776564829078341E-4 0.0 0.0 8.455577589713242 0.0 25 4.154221311986175E-4 0.0 0.0 8.827040506301387 0.0 26 4.531877794894009E-4 0.0 0.0 9.140948574894379 0.0 27 4.531877794894009E-4 0.0 0.0 9.419998950114978 0.0 28 4.531877794894009E-4 0.0 0.0 9.68182818971498 0.0 29 4.531877794894009E-4 0.0 0.0 9.958839219927874 0.0 30 4.909534277801842E-4 0.0 0.0 10.225993415936877 0.0 31 5.287190760709676E-4 0.0 0.0 10.563014061283829 0.0 32 5.287190760709676E-4 0.0 0.0 10.98398774278119 0.0 33 5.664847243617512E-4 0.0 0.0 11.320706262941815 0.0 34 6.042503726525346E-4 0.0 0.0 11.670680525652505 0.0 35 6.042503726525346E-4 0.0 0.0 12.005095341267392 0.0 36 6.797816692341014E-4 0.0 0.0 12.383469371492751 0.0 37 7.175473175248848E-4 0.0 0.0 12.793302186744333 0.0 38 7.175473175248848E-4 0.0 0.0 13.128736674863072 0.0 39 7.175473175248848E-4 0.0 0.0 13.47908859405667 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACTATCG 35 1.2127384E-7 45.0 3 CGTCGGT 20 7.0349546E-4 45.0 36 CCGCGTA 25 3.89219E-5 45.0 36 CGTCCTA 20 7.0349546E-4 45.0 43 ATCGCTA 130 0.0 43.269234 1 ATTACGC 140 0.0 41.785713 1 CGCGTAA 95 0.0 40.263157 33 CGTAATC 40 3.4605E-7 39.375 45 TCGTTGC 180 0.0 38.75 2 CGAATCC 35 6.2513755E-6 38.571426 39 CGTTTTT 3180 0.0 38.490562 1 TTCGCGA 65 9.094947E-12 38.076927 2 ATCTCGT 210 0.0 37.500004 1 CGGTAAG 60 1.5643309E-10 37.499996 3 ATGTTTT 5145 0.0 37.478134 1 ATTAGTT 1655 0.0 36.570995 1 AACGTCC 25 0.0021076042 36.0 13 ACGATTG 50 4.883077E-8 36.0 3 TTACGCG 50 4.883077E-8 36.0 3 TAGGCGT 25 0.0021076042 36.0 36 >>END_MODULE