##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545678_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 757430 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.007458114941315 31.0 31.0 34.0 31.0 34.0 2 32.69663203200296 34.0 31.0 34.0 31.0 34.0 3 32.644177019658585 34.0 31.0 34.0 31.0 34.0 4 36.077285029639704 37.0 35.0 37.0 35.0 37.0 5 35.85173151314313 37.0 35.0 37.0 35.0 37.0 6 35.864930092549805 37.0 35.0 37.0 35.0 37.0 7 35.85819151604769 37.0 35.0 37.0 35.0 37.0 8 35.82318762129834 37.0 35.0 37.0 35.0 37.0 9 38.017591064520815 39.0 39.0 39.0 35.0 39.0 10 38.00901601468122 39.0 39.0 39.0 35.0 39.0 11 37.85191370819746 39.0 38.0 39.0 35.0 39.0 12 37.385787465508365 39.0 37.0 39.0 34.0 39.0 13 37.11300714257423 39.0 37.0 39.0 33.0 39.0 14 37.28774408196137 39.0 35.0 41.0 33.0 41.0 15 36.88769259205471 39.0 35.0 41.0 31.0 41.0 16 37.020139154773375 39.0 35.0 41.0 32.0 41.0 17 37.2210250452187 39.0 35.0 41.0 32.0 41.0 18 37.3956259984421 39.0 35.0 41.0 33.0 41.0 19 37.37658397475674 39.0 35.0 41.0 33.0 41.0 20 37.376444027830956 39.0 35.0 41.0 33.0 41.0 21 37.33650634382055 39.0 35.0 41.0 33.0 41.0 22 37.22102108445665 39.0 35.0 41.0 33.0 41.0 23 37.13562045337523 38.0 35.0 41.0 33.0 41.0 24 37.08384801235758 38.0 35.0 41.0 33.0 41.0 25 37.027614433016915 38.0 35.0 41.0 32.0 41.0 26 36.960000264050805 38.0 35.0 41.0 32.0 41.0 27 36.87888385725414 38.0 35.0 41.0 32.0 41.0 28 36.777616413397936 38.0 35.0 41.0 32.0 41.0 29 36.68258452926343 38.0 35.0 41.0 32.0 41.0 30 36.622045601573745 38.0 35.0 41.0 32.0 41.0 31 36.63329812655955 38.0 35.0 41.0 32.0 41.0 32 36.52660443869401 38.0 35.0 41.0 31.0 41.0 33 36.33272381606221 38.0 35.0 40.0 31.0 41.0 34 36.248824313797975 38.0 35.0 40.0 31.0 41.0 35 36.14092919477707 38.0 35.0 40.0 31.0 41.0 36 36.015874734298876 37.0 35.0 40.0 30.0 41.0 37 35.95497801777062 37.0 35.0 40.0 30.0 41.0 38 35.87816563906895 37.0 35.0 40.0 30.0 41.0 39 35.79548737177033 37.0 35.0 40.0 30.0 41.0 40 35.72895053008199 37.0 35.0 40.0 30.0 41.0 41 35.68502963970268 37.0 35.0 40.0 30.0 41.0 42 35.51720423009387 36.0 35.0 40.0 29.0 41.0 43 35.509868898776126 36.0 35.0 40.0 30.0 41.0 44 35.46248762261859 36.0 34.0 40.0 30.0 41.0 45 35.40026141029534 36.0 34.0 40.0 30.0 41.0 46 35.35270322009955 36.0 34.0 40.0 30.0 41.0 47 35.2374648482368 36.0 34.0 40.0 29.0 41.0 48 35.19953395033205 35.0 34.0 40.0 29.0 41.0 49 35.20402281398941 35.0 34.0 40.0 29.0 41.0 50 35.159498567524395 35.0 34.0 40.0 29.0 41.0 51 35.052773193562444 36.0 34.0 40.0 29.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 3.0 10 2.0 11 3.0 12 11.0 13 6.0 14 9.0 15 14.0 16 30.0 17 86.0 18 158.0 19 318.0 20 559.0 21 983.0 22 1440.0 23 2332.0 24 3476.0 25 4851.0 26 6853.0 27 8619.0 28 9832.0 29 11621.0 30 14489.0 31 18280.0 32 23299.0 33 31698.0 34 56000.0 35 140922.0 36 52007.0 37 68943.0 38 100804.0 39 199687.0 40 95.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 1.399865334090279 92.46002930963918 2.8348494250293754 3.305255931241171 2 2.833529171012503 1.7873598880424595 92.60895396274243 2.770156978202606 3 27.413358330142717 16.07660113805896 43.25548235480506 13.254558176993253 4 26.394518305321945 16.123470155657948 43.81210144831866 13.669910090701451 5 23.086225789841965 14.12896241236814 47.42431643848277 15.36049535930713 6 21.430759278085105 14.909760637946743 48.86220508825898 14.797274995709175 7 21.02095243124777 17.166206778184122 47.36437690611673 14.448463884451368 8 22.935716831918462 19.316240444661553 45.596028675917246 12.152014047502739 9 83.36902420025612 3.357141914104274 9.217353418797778 4.056480466841821 10 85.65834466551364 3.04080905166154 8.175144897878353 3.125701384946464 11 80.23592939281518 4.966531560672274 9.43691166180373 5.360627384708818 12 51.216614076548325 18.04166721677251 13.907819864541937 16.833898842137227 13 42.93796126374714 19.562467818808337 21.17911886246914 16.320452054975377 14 35.0108920956392 23.52349392023025 23.49048756980843 17.975126414322116 15 18.599342513499597 35.97639385817831 30.732080852355992 14.692182775966096 16 14.568739025388485 40.04739711920573 29.315052216046368 16.068811639359414 17 12.364046842612519 22.753257726786632 48.15349273200164 16.72920269859921 18 16.655532524457705 18.386781616783068 44.52147393158444 20.43621192717479 19 16.32414876622262 19.22791545093276 28.76463831641208 35.68329746643254 20 20.989266334842824 20.409014694427206 34.50549885798028 24.09622011274969 21 26.934502198222937 21.711313256670582 27.90858561187172 23.445598933234756 22 27.825805685013798 21.49756413133887 27.103362686980976 23.573267496666357 23 23.115403403614856 26.452345431260976 29.911939057074584 20.520312108049588 24 27.366753363347108 21.309031857729426 23.958253567986482 27.365961210936984 25 23.5011816273451 26.906776863868608 23.53616835879223 26.055873149994056 26 23.64614551839774 21.104524510515823 35.24193654859195 20.007393422494488 27 24.29333403746881 22.339226067095307 32.82151485945896 20.54592503597692 28 20.512258558546666 29.637986348573463 26.582126401119577 23.267628691760294 29 19.940060467633973 29.69185271246188 27.607039594417966 22.761047225486184 30 18.155605138428633 27.155380695245768 35.242200599395325 19.446813566930278 31 19.320465257515547 22.465442351108354 33.77487028504284 24.439222106333258 32 20.795717095969266 27.603342883170722 29.92408539402981 21.676854626830202 33 25.878034933921285 26.042934660628703 27.151023856990086 20.928006548459923 34 30.321613878510224 23.980829911675006 25.467964036280584 20.22959217353419 35 28.986573016648403 24.62973476096801 23.419986005307422 22.963706217076165 36 21.620743831113106 26.10089381196942 27.851154562137754 24.427207794779715 37 20.25177244101765 25.7242253409556 31.5782316517698 22.445770566256947 38 30.125292106201236 22.798938515770434 25.088919108036382 21.986850269991947 39 25.41198526596517 29.781233909404172 25.688182406294974 19.11859841833569 40 23.216930937512377 28.349022351900505 25.551536115548636 22.882510595038486 41 22.24258347306022 29.341457296383822 24.830413371532682 23.585545859023277 42 26.39953527058606 22.931227968261094 25.89876292198619 24.770473839166655 43 19.942172874060972 23.666873506462643 26.78782197694837 29.603131642528023 44 22.386227110095984 23.625021454127772 24.87041706824393 29.118334367532313 45 21.734153651162483 22.058408037706453 27.787914394729547 28.419523916401516 46 22.904822887923636 25.079413279114902 28.554057800720862 23.461706032240603 47 19.255772810688775 30.843378265978373 26.697780652997636 23.203068270335212 48 21.37847721901694 27.671864066646425 26.839311883606403 24.110346830730233 49 22.412632190433442 23.81566613416421 29.07265357854851 24.699048096853833 50 23.149597982651862 21.618367373882734 32.21617839272276 23.01585625074264 51 22.05141069141703 20.73564553820155 30.7600702375137 26.45287353286772 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 567.0 1 640.5 2 714.0 3 2170.0 4 3626.0 5 2533.0 6 1440.0 7 1492.5 8 1545.0 9 1706.5 10 1868.0 11 1915.0 12 1962.0 13 1976.0 14 1990.0 15 1792.5 16 1595.0 17 1565.5 18 1536.0 19 2033.5 20 2531.0 21 2614.5 22 2698.0 23 2977.5 24 3257.0 25 2862.5 26 3364.5 27 4261.0 28 5378.0 29 6495.0 30 7445.5 31 8396.0 32 11112.5 33 13829.0 34 13148.0 35 12467.0 36 16998.0 37 21529.0 38 31292.5 39 41056.0 40 54561.0 41 68066.0 42 74787.5 43 81509.0 44 86978.5 45 92448.0 46 86861.5 47 81275.0 48 73197.5 49 65120.0 50 55615.0 51 46110.0 52 41640.5 53 37171.0 54 34791.5 55 32412.0 56 31828.0 57 31244.0 58 29287.0 59 27330.0 60 24383.0 61 21436.0 62 18445.5 63 15455.0 64 11847.0 65 8239.0 66 6935.5 67 5632.0 68 4360.5 69 3089.0 70 2553.5 71 2018.0 72 1895.5 73 1773.0 74 1212.5 75 482.0 76 312.0 77 196.5 78 81.0 79 143.5 80 206.0 81 109.5 82 13.0 83 11.0 84 9.0 85 4.5 86 0.0 87 0.0 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 757430.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 16.10767179936517 #Duplication Level Percentage of deduplicated Percentage of total 1 72.43139556522908 11.667011477347039 2 11.648578311789663 3.752629527510222 3 4.797091932167984 2.318099473042332 4 2.4392713252351594 1.5716392774596195 5 1.4539104074918066 1.1709555834779646 6 0.9033455428808316 0.8730476115686274 7 0.6530096508932607 0.736292559688467 8 0.44298192317126645 0.5708325945195485 9 0.34125747708185916 0.49471770959225714 >10 2.308404500355636 7.896040355690674 >50 0.7522412061398831 8.820726495545326 >100 1.805542960429534 55.94524803238598 >500 0.013945583974239926 1.504102010318215 >1k 0.009023613159802305 2.6786572918537166 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source ACTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGC 4520 0.5967548156265265 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2502 0.33032755502158617 No Hit ATCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTG 2137 0.2821382834057273 No Hit ATGCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCT 1768 0.23342091018311922 No Hit CTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGCT 1717 0.22668761469706772 No Hit ATGCCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTC 1501 0.19817012793261424 No Hit CCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGC 1372 0.1811388511149545 No Hit ATGTCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTC 1325 0.17493365723565213 No Hit ATTGCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTC 1276 0.16846441255297517 No Hit ATATCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTC 1087 0.14351161163407838 No Hit ATCCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCT 1067 0.1408711036003327 No Hit ATGGCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTC 994 0.13123324927716093 No Hit ATATTTATGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTT 932 0.12304767437254928 No Hit ATTTCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTC 900 0.11882286151855617 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.3202540168728464E-4 0.0 0.0 0.2397581294641089 0.0 2 1.3202540168728464E-4 0.0 0.0 1.0959428594061498 0.0 3 1.3202540168728464E-4 0.0 0.0 1.496375902723684 0.0 4 1.3202540168728464E-4 0.0 0.0 2.0221010522424514 0.0 5 1.3202540168728464E-4 0.0 0.0 3.7087255587975125 0.0 6 1.3202540168728464E-4 0.0 0.0 4.069286930805487 0.0 7 1.3202540168728464E-4 0.0 0.0 4.632111218198381 0.0 8 1.3202540168728464E-4 0.0 0.0 6.481655070435552 0.0 9 1.3202540168728464E-4 0.0 0.0 6.71124724396974 0.0 10 1.3202540168728464E-4 0.0 0.0 7.151948034801896 0.0 11 1.3202540168728464E-4 0.0 0.0 7.475278243534056 0.0 12 1.3202540168728464E-4 0.0 0.0 8.353379190156186 0.0 13 2.640508033745693E-4 0.0 0.0 9.168636045575168 0.0 14 2.640508033745693E-4 0.0 0.0 9.51480664879923 0.0 15 3.960762050618539E-4 0.0 0.0 9.69079650924838 0.0 16 3.960762050618539E-4 0.0 0.0 9.774104537713056 0.0 17 3.960762050618539E-4 0.0 0.0 9.940984645445784 0.0 18 3.960762050618539E-4 0.0 0.0 10.327951097791216 0.0 19 3.960762050618539E-4 0.0 0.0 10.7818544287921 0.0 20 3.960762050618539E-4 0.0 0.0 11.365934805856647 0.0 21 3.960762050618539E-4 0.0 0.0 11.676590576026827 0.0 22 3.960762050618539E-4 0.0 0.0 12.034115363795994 0.0 23 3.960762050618539E-4 0.0 0.0 12.547430125556158 0.0 24 3.960762050618539E-4 0.0 0.0 12.933868476294839 0.0 25 5.281016067491386E-4 0.0 0.0 13.421306259324293 0.0 26 7.921524101237078E-4 0.0 0.0 13.743052163236207 0.0 27 7.921524101237078E-4 0.0 0.0 14.04776679033046 0.0 28 7.921524101237078E-4 0.0 0.0 14.35208534121965 0.0 29 7.921524101237078E-4 0.0 0.0 14.600425121793434 0.0 30 7.921524101237078E-4 0.0 0.0 14.871869347662491 0.0 31 7.921524101237078E-4 0.0 0.0 15.160080799545833 0.0 32 7.921524101237078E-4 0.0 0.0 15.480374424039185 0.0 33 7.921524101237078E-4 0.0 0.0 15.828657433690243 0.0 34 7.921524101237078E-4 0.0 0.0 16.107231031250414 0.0 35 7.921524101237078E-4 0.0 0.0 16.426072376325205 0.0 36 7.921524101237078E-4 0.0 0.0 16.72471383494184 0.0 37 7.921524101237078E-4 0.0 0.0 17.102438509169165 0.0 38 7.921524101237078E-4 0.0 0.0 17.42986150535363 0.0 39 7.921524101237078E-4 0.0 0.0 17.760057034973528 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AGCCGTC 65 0.0 45.000004 28 AGGTAAC 45 3.8380676E-10 45.000004 33 AACCGAG 45 3.8380676E-10 45.000004 3 CCTTACG 45 3.8380676E-10 45.000004 31 GACACGG 65 0.0 45.000004 16 TGAACGT 45 3.8380676E-10 45.000004 45 CACGAAT 45 3.8380676E-10 45.000004 11 AGGCACC 45 3.8380676E-10 45.000004 26 TATTCGA 65 0.0 45.000004 28 GTCGTTC 65 0.0 45.000004 29 GAGCCGT 65 0.0 45.000004 27 CGAGCCG 65 0.0 45.000004 26 ATGCGTC 65 0.0 45.000004 1 GCGTGTT 65 0.0 45.000004 10 GAACCTC 45 3.8380676E-10 45.000004 12 ATTGCTA 155 0.0 45.000004 1 TCCTTAC 45 3.8380676E-10 45.000004 30 GTGCGTT 45 3.8380676E-10 45.000004 3 TGCGTTA 125 0.0 45.000004 2 CGAAGTA 45 3.8380676E-10 45.000004 25 >>END_MODULE