##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545677_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 622888 Sequences flagged as poor quality 0 Sequence length 52 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.670921578197046 33.0 31.0 34.0 31.0 34.0 2 33.0462667445833 34.0 33.0 34.0 31.0 34.0 3 33.09536866980902 34.0 33.0 34.0 31.0 34.0 4 36.460638188566804 37.0 37.0 37.0 35.0 37.0 5 36.45205879708712 37.0 37.0 37.0 35.0 37.0 6 36.460492094887044 37.0 37.0 37.0 35.0 37.0 7 36.530181990983934 37.0 37.0 37.0 35.0 37.0 8 36.58840915220714 37.0 37.0 37.0 35.0 37.0 9 38.43768061031839 39.0 39.0 39.0 37.0 39.0 10 38.19941305660087 39.0 39.0 39.0 37.0 39.0 11 38.0181043783152 39.0 39.0 39.0 35.0 39.0 12 37.28642548901247 39.0 35.0 39.0 35.0 39.0 13 37.07291198417693 39.0 35.0 39.0 34.0 39.0 14 38.31447868637701 40.0 35.0 41.0 35.0 41.0 15 38.38226133751172 40.0 35.0 41.0 35.0 41.0 16 38.51507815209155 40.0 35.0 41.0 35.0 41.0 17 38.49445807271933 40.0 35.0 41.0 35.0 41.0 18 38.52808048959042 40.0 36.0 41.0 35.0 41.0 19 38.49324276595471 40.0 36.0 41.0 35.0 41.0 20 38.38530201256084 40.0 35.0 41.0 35.0 41.0 21 38.33107878141817 40.0 35.0 41.0 35.0 41.0 22 38.40118929887877 40.0 35.0 41.0 35.0 41.0 23 38.3880858196016 40.0 35.0 41.0 35.0 41.0 24 38.35963929309924 40.0 35.0 41.0 35.0 41.0 25 38.27481344960892 40.0 35.0 41.0 35.0 41.0 26 38.16997758826627 40.0 35.0 41.0 35.0 41.0 27 38.083273397464716 40.0 35.0 41.0 35.0 41.0 28 38.06975892937414 40.0 35.0 41.0 35.0 41.0 29 38.09035492737057 40.0 35.0 41.0 35.0 41.0 30 38.001444882547105 40.0 35.0 41.0 35.0 41.0 31 37.84567209514391 40.0 35.0 41.0 35.0 41.0 32 37.803287268337165 40.0 35.0 41.0 34.0 41.0 33 37.74135318066811 40.0 35.0 41.0 34.0 41.0 34 37.59448247518013 39.0 35.0 41.0 34.0 41.0 35 37.60268298634747 39.0 35.0 41.0 34.0 41.0 36 37.548748731714205 39.0 35.0 41.0 34.0 41.0 37 37.45528730686737 39.0 35.0 41.0 34.0 41.0 38 37.37605315883433 39.0 35.0 41.0 34.0 41.0 39 37.320847407559626 39.0 35.0 41.0 34.0 41.0 40 37.169937452639964 39.0 35.0 41.0 33.0 41.0 41 37.14121318760355 38.0 35.0 41.0 33.0 41.0 42 37.12348126790049 38.0 35.0 41.0 34.0 41.0 43 37.026815414649185 38.0 35.0 41.0 33.0 41.0 44 36.918786362877434 38.0 35.0 41.0 33.0 41.0 45 36.838694917866455 38.0 35.0 40.0 33.0 41.0 46 36.83265370339451 38.0 35.0 41.0 33.0 41.0 47 36.83994233313212 38.0 35.0 41.0 33.0 41.0 48 36.78435609612001 38.0 35.0 40.0 33.0 41.0 49 36.76619552792798 37.0 35.0 40.0 33.0 41.0 50 36.66371803598721 37.0 35.0 40.0 33.0 41.0 51 36.55314278008245 37.0 35.0 40.0 33.0 41.0 52 36.219278586198485 37.0 35.0 40.0 32.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 2.0 13 1.0 14 1.0 15 17.0 16 11.0 17 22.0 18 46.0 19 99.0 20 180.0 21 321.0 22 553.0 23 835.0 24 1200.0 25 1646.0 26 2085.0 27 2512.0 28 3106.0 29 4113.0 30 5328.0 31 6998.0 32 9375.0 33 13892.0 34 37720.0 35 115540.0 36 35029.0 37 46473.0 38 78980.0 39 256416.0 40 387.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 27.425957796586225 14.09948497964321 45.98499248661076 12.48956473715981 2 24.654191443726642 14.011828771785616 48.67632704434826 12.65765274013948 3 24.643274553370752 13.969766635414393 45.51797433888596 15.868984472328892 4 21.834422881802183 14.918091213829774 48.26180629583489 14.985679608533156 5 22.157594944837594 16.94863282002543 46.188881468257534 14.704890766879439 6 22.121793966170483 18.91800773172705 46.102188515431344 12.858009786671118 7 85.28932970293215 2.4635247428109066 7.149921013087425 5.09722454116952 8 87.68510550853445 2.355158551778169 6.570683654204287 3.3890522854831047 9 81.31638432591413 3.21373986976792 8.993430600685839 6.476445203632114 10 50.71393252077419 17.59417423357008 12.609811073579841 19.08208217207588 11 41.66463312826704 18.41567023285085 22.81678247132711 17.102914167555003 12 34.49544701455157 23.65224566856321 23.238367090070767 18.613940226814453 13 19.48713091278047 33.25381127907425 32.60168762281502 14.657370185330269 14 14.479649632036578 40.23773134175004 29.15548220546872 16.12713682074466 15 12.110844967313545 22.870243125569925 46.16335520992538 18.855556697191147 16 16.45785438152605 19.954149060505262 42.48661075506351 21.101385802905178 17 16.30004109888134 20.682369864245256 26.856995158038043 36.160593878835364 18 20.688309936938904 21.802153838250216 32.27947881481101 25.230057409999873 19 25.035640436161877 23.208506184097303 27.603357264869448 24.152496114871376 20 26.80337396128999 20.87277327545241 25.90738623958079 26.416466523676807 21 22.598765749219762 27.33075609098265 30.045529854484272 20.024948305313313 22 28.034092806411426 20.89589139620606 23.430536468835488 27.63947932854703 23 23.860790382861765 27.45276839496025 21.325182055200937 27.36125916697705 24 24.537637584926987 20.495016760637547 32.585954457302115 22.38139119713335 25 26.69308126019445 22.215069161711256 29.19385186421957 21.897997713874727 26 19.6679017736736 29.616239195489396 25.555958695624252 25.159900335212747 27 19.24631715492994 27.86247286831662 27.683467974981056 25.207742001772388 28 19.570773558007218 25.7120060107114 34.33458342430742 20.382637006973965 29 21.35985923633141 20.53868432206111 32.160195733422384 25.941260708185098 30 22.35425951374886 26.3220675305994 29.81017454181169 21.513498413840047 31 25.04061725382412 24.96548336137476 27.96120650903533 22.03269287576579 32 30.608552420338807 25.17418861817855 23.54949846521365 20.66776049626899 33 29.085485673186835 24.241115577760368 22.995626822157433 23.677771926895364 34 20.067652611705476 26.802571248763822 28.799559471365637 24.330216668165065 35 19.94836953031685 25.53524871244911 31.03848524935462 23.477896507879425 36 29.377994117722604 21.418457250741707 25.075615519965066 24.12793311157062 37 27.096845660857166 29.2673803316166 24.250427043063922 19.38534696446231 38 22.572276235856208 26.756174464751286 27.65392815401806 23.017621145374452 39 21.947123720476235 29.192246439167235 24.825169211800517 24.035460628556017 40 26.408760483425592 22.22277520196247 26.769981120201386 24.59848319441055 41 20.11581536327558 23.260200870782548 27.218376337319068 29.405607428622805 42 22.214587534195555 24.433124414019854 24.104333363301265 29.247954688483325 43 22.704723802673996 20.675145451509742 28.742727424512914 27.877403321303344 44 25.84044001489835 23.436476541529135 26.176134393341982 24.54694905023054 45 19.96249727077741 27.842405055162406 27.202964256816635 24.99213341724355 46 22.108468938236086 25.90305159193948 26.551964398094043 25.43651507173039 47 23.045716083790342 23.191809763553 29.49904316666881 24.26343098598785 48 22.304009709610717 20.426144025892295 34.25238566162777 23.017460602869217 49 22.698462644969883 18.98415124388333 29.645779016452394 28.67160709469439 50 19.595497103813205 25.709276788122427 29.81226159437973 24.882964513684644 51 21.94519721041343 25.529469182260694 26.77415522533746 25.751178381988417 52 20.342501380665546 22.859326235214038 29.189677759083494 27.608494625036922 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 299.0 1 240.0 2 181.0 3 143.5 4 106.0 5 131.5 6 157.0 7 234.5 8 312.0 9 355.0 10 398.0 11 464.0 12 530.0 13 558.0 14 523.5 15 461.0 16 471.0 17 481.0 18 721.0 19 961.0 20 856.0 21 751.0 22 913.0 23 1075.0 24 1226.0 25 1377.0 26 1270.0 27 1163.0 28 1757.0 29 2351.0 30 3419.0 31 4487.0 32 5475.5 33 6464.0 34 7661.0 35 8858.0 36 8913.0 37 8968.0 38 12326.5 39 22446.5 40 29208.0 41 40734.0 42 52260.0 43 57776.0 44 63292.0 45 68789.5 46 74287.0 47 76472.5 48 78658.0 49 68718.5 50 58779.0 51 49743.5 52 40708.0 53 37409.5 54 34111.0 55 30503.5 56 26896.0 57 25828.5 58 24761.0 59 24330.0 60 23899.0 61 21065.0 62 18231.0 63 17082.5 64 12979.0 65 10024.0 66 7805.0 67 5586.0 68 4774.5 69 3963.0 70 3222.0 71 2481.0 72 2236.0 73 1991.0 74 1445.5 75 900.0 76 722.5 77 545.0 78 415.5 79 286.0 80 277.5 81 269.0 82 150.0 83 31.0 84 76.5 85 122.0 86 64.0 87 6.0 88 7.5 89 4.5 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 622888.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 16.116695306327326 #Duplication Level Percentage of deduplicated Percentage of total 1 66.03479450126433 10.642626625928164 2 13.091907884272741 4.219965806986565 3 5.998367562070655 2.900215869997507 4 3.2735472559766894 2.1103505478176086 5 1.9987214419010917 1.6106392240671557 6 1.380807511831475 1.335243236692551 7 0.8938753904417394 1.0084422116701723 8 0.7039018734320495 0.9075657615725861 9 0.5019300290660164 0.7280508009197705 >10 3.1925549458321276 10.825847909824965 >50 1.0978469560049091 13.039167465077877 >100 1.8117474355928012 46.204959306710414 >500 0.009998606156693162 1.066131938664235 >1k 0.009998606156693162 3.4007932940704375 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGCTT 3560 0.571531318631921 Illumina Single End Adapter 2 (95% over 21bp) GTCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGC 2553 0.4098650158615995 No Hit GCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGCT 2536 0.4071357932726269 No Hit TTCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGC 2215 0.35560164909261377 No Hit TGCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGC 2192 0.351909171472239 No Hit GCCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGC 2162 0.34709289631522844 No Hit GGCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGC 1676 0.26906923877165717 No Hit ATCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGC 1570 0.2520517332168865 No Hit CCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGCT 1500 0.24081375785052853 No Hit TCCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGC 1140 0.18301845596640165 No Hit AGCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGC 951 0.15267592247723508 No Hit ACCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGC 950 0.1525153799720014 No Hit CTCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGC 781 0.1253836965875085 No Hit TCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGCT 685 0.10997161608507469 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.5861406866081864 0.0 2 0.0 0.0 0.0 1.40041227315344 0.0 3 0.0 0.0 0.0 4.428243921860751 0.0 4 0.0 0.0 0.0 5.048419619578479 0.0 5 0.0 0.0 0.0 5.995620400457225 0.0 6 0.0 0.0 0.0 9.269563709687777 0.0 7 0.0 0.0 0.0 9.695322433567512 0.0 8 0.0 0.0 0.0 10.489686749463788 0.0 9 0.0 0.0 0.0 10.983997123078305 0.0 10 0.0 0.0 0.0 12.565661884640578 0.0 11 0.0 0.0 0.0 13.969445550403925 0.0 12 0.0 0.0 0.0 14.549967249328933 0.0 13 0.0 0.0 0.0 14.839585928770502 0.0 14 0.0 0.0 0.0 14.971230783062124 0.0 15 0.0 0.0 0.0 15.208191520787043 0.0 16 0.0 0.0 0.0 15.832220238630379 0.0 17 0.0 0.0 0.0 16.578582345461786 0.0 18 0.0 0.0 0.0 17.517113831057912 0.0 19 0.0 0.0 0.0 18.028281167721968 0.0 20 0.0 0.0 0.0 18.58905613850323 0.0 21 1.6054250523368568E-4 0.0 0.0 19.425964218286435 0.0 22 1.6054250523368568E-4 0.0 0.0 20.040199843310514 0.0 23 1.6054250523368568E-4 0.0 0.0 20.79876318053968 0.0 24 3.2108501046737136E-4 0.0 0.0 21.282477748808773 0.0 25 3.2108501046737136E-4 0.0 0.0 21.71225003531935 0.0 26 3.2108501046737136E-4 0.0 0.0 22.153902467217222 0.0 27 3.2108501046737136E-4 0.0 0.0 22.52925084445358 0.0 28 3.2108501046737136E-4 0.0 0.0 22.895127213881146 0.0 29 3.2108501046737136E-4 0.0 0.0 23.28508495909377 0.0 30 3.2108501046737136E-4 0.0 0.0 23.73412234623239 0.0 31 3.2108501046737136E-4 0.0 0.0 24.183480818381476 0.0 32 3.2108501046737136E-4 0.0 0.0 24.582107858876718 0.0 33 3.2108501046737136E-4 0.0 0.0 25.00176596755757 0.0 34 3.2108501046737136E-4 0.0 0.0 25.378719769846263 0.0 35 3.2108501046737136E-4 0.0 0.0 25.896308806719667 0.0 36 3.2108501046737136E-4 0.0 0.0 26.329131400829684 0.0 37 3.2108501046737136E-4 0.0 0.0 26.742528351806424 0.0 38 6.421700209347427E-4 0.0 0.0 27.18225427364149 0.0 39 6.421700209347427E-4 0.0 0.0 27.60383889238515 0.0 40 6.421700209347427E-4 0.0 0.0 28.043725356725446 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGCAGT 145 0.0 46.000004 41 TACGGGA 145 0.0 46.000004 4 TGATCGG 25 3.4153407E-5 46.0 2 AGGTCAG 20 6.309216E-4 46.0 8 CGGACAG 20 6.309216E-4 46.0 10 ACGCGAA 20 6.309216E-4 46.0 46 CTAGATT 30 1.8600203E-6 46.0 16 GTCATCG 20 6.309216E-4 46.0 21 CAGCGTG 20 6.309216E-4 46.0 31 AACCGTT 25 3.4153407E-5 46.0 36 CTAGACT 25 3.4153407E-5 46.0 37 CGGGTAC 20 6.309216E-4 46.0 6 AATCCTC 25 3.4153407E-5 46.0 23 CTGTCTA 20 6.309216E-4 46.0 33 ACTATGA 20 6.309216E-4 46.0 8 CGGAACA 30 1.8600203E-6 46.0 16 AGGTAAC 20 6.309216E-4 46.0 31 ACTATCA 30 1.8600203E-6 46.0 15 CTCACTA 30 1.8600203E-6 46.0 45 CTCACGA 25 3.4153407E-5 46.0 14 >>END_MODULE