SRR1545674_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545674_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1403948
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ACTGTCTCTTATACACATCTGACGCGGGAATATTCGTATGCCGTCTTCTGC	5933	0.42259399920794793	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4231	0.30136443799912815	No Hit
ATCTGTCTCTTATACACATCTGACGCGGGAATATTCGTATGCCGTCTTCTG	2660	0.189465706707086	No Hit
ATGCTGTCTCTTATACACATCTGACGCGGGAATATTCGTATGCCGTCTTCT	2339	0.1666016120255166	No Hit
CTGTCTCTTATACACATCTGACGCGGGAATATTCGTATGCCGTCTTCTGCT	2230	0.1588377917130834	No Hit
ATGCCTGTCTCTTATACACATCTGACGCGGGAATATTCGTATGCCGTCTTC	1956	0.13932139936806776	No Hit
ATTGCTGTCTCTTATACACATCTGACGCGGGAATATTCGTATGCCGTCTTC	1805	0.12856601526552264	No Hit
ATATCTGTCTCTTATACACATCTGACGCGGGAATATTCGTATGCCGTCTTC	1708	0.12165692746454998	No Hit
ATGTCTGTCTCTTATACACATCTGACGCGGGAATATTCGTATGCCGTCTTC	1670	0.11895027451159161	No Hit
CCTGTCTCTTATACACATCTGACGCGGGAATATTCGTATGCCGTCTTCTGC	1624	0.11567379988432619	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1592	0.1133945131870981	No Hit
ATGGCTGTCTCTTATACACATCTGACGCGGGAATATTCGTATGCCGTCTTC	1449	0.10320895075886002	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACCCGT	55	1.8189894E-12	45.000004	17
ACACGGC	25	3.891248E-5	45.000004	44
CGTATTG	50	2.1827873E-11	45.000004	3
GTCGATG	45	3.8562575E-10	45.000004	3
GTCGATC	25	3.891248E-5	45.000004	43
ATCGTAC	25	3.891248E-5	45.000004	1
TAGTTCG	25	3.891248E-5	45.000004	2
TCGCTCA	25	3.891248E-5	45.000004	32
CACGTTG	50	2.1827873E-11	45.000004	3
ATACGAC	25	3.891248E-5	45.000004	23
CAATACG	25	3.891248E-5	45.000004	41
ATCGCAC	45	3.8562575E-10	45.000004	1
TGATCGA	20	7.033821E-4	45.0	16
GATCGAA	20	7.033821E-4	45.0	12
CGAGTAC	20	7.033821E-4	45.0	16
CCTACGC	20	7.033821E-4	45.0	15
CGTCTAG	20	7.033821E-4	45.0	3
CGACATA	20	7.033821E-4	45.0	35
CGATTGA	35	1.2121927E-7	45.0	13
TAACGCG	20	7.033821E-4	45.0	23