SRR1545672_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545672_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1610624
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ACTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTCTGC	8694	0.5397907891599777	No Hit
GCCCTGCTAGAGGACTTGCGTCTGTATCTATGCTCTGCCCCATGCAGCTCC	5997	0.37234016132877695	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4350	0.2700816577922594	No Hit
ATCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTCTG	3813	0.23674054279583567	No Hit
ATGCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTCT	3625	0.22506804816021614	No Hit
CTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTCTGCT	3071	0.19067144162759278	Illumina Single End Adapter 2 (95% over 21bp)
ATGCCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTC	2969	0.184338492410395	No Hit
ATTGCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTC	2934	0.1821654216005722	No Hit
ATGTCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTC	2744	0.17036875149010572	No Hit
CCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTCTGC	2660	0.16515338154653103	No Hit
ATATCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTC	2507	0.15565395772073432	No Hit
ATGGCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTC	2454	0.15236330763728842	No Hit
ATAGCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTC	2043	0.12684524755622667	No Hit
ATTTCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTC	1785	0.11082661130096161	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGATCGC	40	6.8175723E-9	45.000004	26
GGTCGAA	30	2.1660471E-6	45.000004	32
CGACCGT	20	7.0341304E-4	45.000004	44
CGATTGT	80	0.0	45.000004	32
TAACGCG	35	1.2123382E-7	45.000004	3
ATCCGAT	20	7.0341304E-4	45.000004	20
ATTCCGA	20	7.0341304E-4	45.000004	1
ACCTAGC	20	7.0341304E-4	45.000004	13
GCCGAAC	20	7.0341304E-4	45.000004	34
CTACGAT	30	2.1660471E-6	45.000004	12
TACGACA	35	1.2123382E-7	45.000004	17
GTGTCGA	30	2.1660471E-6	45.000004	20
CGTAATG	35	1.2123382E-7	45.000004	3
CAGTCGA	20	7.0341304E-4	45.000004	9
ACGTACT	30	2.1660471E-6	45.000004	39
CCGCGAA	40	6.8175723E-9	45.000004	44
CGCAATA	35	1.2123382E-7	45.000004	45
CGATCAT	20	7.0341304E-4	45.000004	25
TCGAAGT	20	7.0341304E-4	45.000004	2
TCGAACG	35	1.2123382E-7	45.000004	2