##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545672_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1610624 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.867932552849084 31.0 31.0 34.0 31.0 34.0 2 32.540627110983074 34.0 31.0 34.0 31.0 34.0 3 32.48526720078677 34.0 31.0 34.0 31.0 34.0 4 35.96197498609234 37.0 35.0 37.0 35.0 37.0 5 35.72263358797584 37.0 35.0 37.0 35.0 37.0 6 35.71787704641183 37.0 35.0 37.0 33.0 37.0 7 35.70482930839228 37.0 35.0 37.0 33.0 37.0 8 35.657360749622505 37.0 35.0 37.0 33.0 37.0 9 37.85633953051737 39.0 38.0 39.0 35.0 39.0 10 37.82520625546372 39.0 38.0 39.0 35.0 39.0 11 37.63038486946674 39.0 37.0 39.0 35.0 39.0 12 37.1325449018517 39.0 37.0 39.0 33.0 39.0 13 36.879754058054516 39.0 37.0 39.0 33.0 39.0 14 37.642300127155686 40.0 36.0 41.0 33.0 41.0 15 37.57705895354844 40.0 36.0 41.0 32.0 41.0 16 37.592910573790036 40.0 36.0 41.0 32.0 41.0 17 37.68223371811174 40.0 36.0 41.0 33.0 41.0 18 37.740345356830645 40.0 36.0 41.0 33.0 41.0 19 37.6931797862195 40.0 36.0 41.0 33.0 41.0 20 37.63393194190574 40.0 36.0 41.0 32.0 41.0 21 37.62426239767941 39.0 36.0 41.0 33.0 41.0 22 37.52100428157037 39.0 35.0 41.0 32.0 41.0 23 37.483113377175556 39.0 35.0 41.0 32.0 41.0 24 37.461793069021695 39.0 35.0 41.0 32.0 41.0 25 37.40176229833903 39.0 35.0 41.0 32.0 41.0 26 37.309401201025196 39.0 35.0 41.0 32.0 41.0 27 37.224499324485414 39.0 35.0 41.0 32.0 41.0 28 37.1473410305571 39.0 35.0 41.0 31.0 41.0 29 37.08802116446793 39.0 35.0 41.0 31.0 41.0 30 37.02314568763411 39.0 35.0 41.0 31.0 41.0 31 36.96409838671223 39.0 35.0 41.0 31.0 41.0 32 36.8381254718668 39.0 35.0 41.0 31.0 41.0 33 36.701607575697366 39.0 35.0 41.0 31.0 41.0 34 36.64292907593579 39.0 35.0 41.0 30.0 41.0 35 36.52981949852976 39.0 35.0 41.0 30.0 41.0 36 36.384112617221646 39.0 35.0 41.0 30.0 41.0 37 36.269537148335054 38.0 35.0 41.0 30.0 41.0 38 36.169437435428755 38.0 35.0 41.0 30.0 41.0 39 36.09343707780339 38.0 35.0 40.0 30.0 41.0 40 36.04841353413335 38.0 35.0 40.0 30.0 41.0 41 36.004048120480014 38.0 35.0 40.0 30.0 41.0 42 35.891029812048004 38.0 35.0 40.0 29.0 41.0 43 35.77037657454502 38.0 35.0 40.0 29.0 41.0 44 35.66895749721847 38.0 35.0 40.0 29.0 41.0 45 35.66263137765239 38.0 35.0 40.0 29.0 41.0 46 35.58804910394977 38.0 34.0 40.0 29.0 41.0 47 35.523310220138285 37.0 34.0 40.0 28.0 41.0 48 35.4600868979973 37.0 34.0 40.0 28.0 41.0 49 35.41121453548438 37.0 34.0 40.0 28.0 41.0 50 35.304626654017326 37.0 34.0 40.0 28.0 41.0 51 35.13224936422157 37.0 34.0 40.0 27.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 5.0 10 6.0 11 16.0 12 15.0 13 15.0 14 13.0 15 41.0 16 76.0 17 193.0 18 392.0 19 786.0 20 1360.0 21 2422.0 22 3856.0 23 5638.0 24 8111.0 25 11879.0 26 15768.0 27 19105.0 28 22858.0 29 27107.0 30 32859.0 31 41157.0 32 50707.0 33 64178.0 34 100092.0 35 177205.0 36 121320.0 37 166590.0 38 244677.0 39 491961.0 40 216.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 2.439923905269014 90.50622615830883 3.161321326392752 3.8925286100294048 2 3.3518685925454976 2.487731463085115 90.76271060160535 3.3976893427640467 3 28.098550623857587 16.182237443375982 42.305590876579515 13.41362105618692 4 26.68934524755623 15.354483728045775 44.07887874513232 13.877292279265676 5 23.848955435905587 14.380016689183819 46.932244893904475 14.83878298100612 6 21.505019172693316 14.517106413414924 48.32549372168799 15.652380692203765 7 21.913308133990306 17.36519510450608 45.13468072001907 15.586816041484541 8 24.849685587697685 19.29438528172932 43.4755722005881 12.3803569299849 9 80.61918858777716 4.5179383890964 10.124709429388858 4.738163593737582 10 82.56594959469125 4.390658527378209 9.042706429309385 4.000685448621156 11 75.40828896129699 7.486228939839466 10.352819776682825 6.75266232218072 12 40.001577028530555 24.80622417150123 16.569416573948978 18.622782226019233 13 31.646492291186522 24.181497357545894 25.893194190574587 18.278816160692998 14 26.770369744893905 24.78691488516252 29.4025172852261 19.040198084717478 15 20.66329571644282 29.001057975045697 32.323062365890486 18.012583942620996 16 16.786226953031868 33.21222085353254 31.53721787332115 18.46433432011444 17 15.186412222840339 25.580644520384645 38.96148325121195 20.27146000556306 18 21.07903520623063 21.752562981800843 36.564896586664545 20.60350522530398 19 20.147594969403162 22.049094015735516 29.465101724548994 28.338209290312328 20 22.34158934673766 22.66171372089327 32.97399020503855 22.022706727330526 21 25.389724727807362 24.840931216720975 29.273933581022014 20.495410474449656 22 25.535444647540334 22.580565048080743 27.902539636811568 23.98145066756735 23 22.91130642533577 24.98534729396805 30.64843191210363 21.454914368592544 24 27.162205455773663 22.85871811173806 25.935165501072877 24.043910931415404 25 24.33684087657951 26.50922872129063 24.458781192879282 24.695149209250577 26 23.438120877374235 23.12296352221251 30.700523523801955 22.738392076611298 27 24.555451800047685 24.32510629420647 28.42078598108559 22.698655924660255 28 21.402326054994834 27.53796044266073 26.182585134705555 24.87712836763888 29 18.980407593578636 26.532325359612173 26.69965181196853 27.787615234840658 30 20.268293530954463 25.845324545021057 30.908082830008745 22.978299094015735 31 20.67111877135818 23.825051656997537 28.91189998410554 26.591929587538743 32 21.712764742112373 26.00712518874672 27.01660971151554 25.263500357625368 33 22.47073184057856 28.374654792179925 26.672271119764762 22.482342247476755 34 25.462056941905747 25.002173070809825 25.54016331558452 23.995606671699914 35 25.089778868314394 25.343966065326235 24.75065564650719 24.815599419852184 36 22.02574902646428 25.08121076054995 28.537759278391476 24.355280934594294 37 23.314380016689185 24.698129420646904 29.241337518874673 22.74615304378924 38 25.27647669474688 26.0902606691568 25.286286557259796 23.346976078836526 39 23.277375725184772 26.02215042120321 28.690557200190735 22.009916653421282 40 22.526859155209408 25.568537411587062 28.662058928713343 23.242544504490183 41 21.42579521974092 28.31474012556624 25.50564253357705 24.75382212111579 42 24.840993304458397 24.191431395533655 27.32512367877295 23.642451621235 43 21.86773573472145 23.530507430660418 29.521539477866966 25.080217356751174 44 20.68185994993245 25.665953071604548 27.333753874274812 26.318433104188188 45 20.894945064769928 23.120480012715568 29.148764702376223 26.835810220138285 46 22.47197359532703 24.889297564173884 27.178720793928317 25.46000804657077 47 20.330505443852818 26.758138460621474 26.926706667726297 25.98464942779941 48 21.364266271954225 25.316709548597316 26.489608996264803 26.82941518318366 49 21.650677004688866 25.245805352459666 29.69613019550187 23.4073874473496 50 21.888224688071205 22.68034004212032 30.84394619725026 24.587489072558213 51 21.04811551299372 23.805742370658827 28.38750695382659 26.75863516252086 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1123.0 1 1355.0 2 1587.0 3 4279.5 4 6972.0 5 4796.5 6 2621.0 7 2791.5 8 2962.0 9 3199.5 10 3437.0 11 3541.5 12 3646.0 13 4047.0 14 4448.0 15 4109.0 16 3770.0 17 3780.5 18 3791.0 19 3950.5 20 4110.0 21 5304.0 22 6498.0 23 7039.5 24 7581.0 25 9756.5 26 15187.0 27 18442.0 28 21741.0 29 25040.0 30 27264.0 31 29488.0 32 38051.5 33 46615.0 34 52486.5 35 58358.0 36 61332.0 37 64306.0 38 76484.0 39 88662.0 40 98475.5 41 108289.0 42 107530.5 43 106772.0 44 112829.5 45 118887.0 46 133812.5 47 148738.0 48 152659.5 49 156581.0 50 146515.0 51 136449.0 52 115280.5 53 94112.0 54 84810.0 55 75508.0 56 70703.0 57 65898.0 58 64316.0 59 62734.0 60 52900.5 61 43067.0 62 39237.5 63 35408.0 64 28159.0 65 20910.0 66 17712.0 67 14514.0 68 12078.0 69 9642.0 70 8288.5 71 6935.0 72 6252.5 73 5570.0 74 4327.5 75 2253.5 76 1422.0 77 905.5 78 389.0 79 241.0 80 93.0 81 102.0 82 111.0 83 95.5 84 80.0 85 56.5 86 33.0 87 19.0 88 5.0 89 3.5 90 2.0 91 1.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1610624.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 17.40425088723498 #Duplication Level Percentage of deduplicated Percentage of total 1 70.64421262561218 12.295096002673276 2 11.378110052245507 3.9605496394370228 3 4.999729551440677 2.6104964244478905 4 2.8552544314521557 1.9877425788753116 5 1.7203247105603683 1.4970481435051275 6 1.1804648398435023 1.2327063741717583 7 0.8130199239730314 0.9905001913203143 8 0.5566442360872953 0.7750380751837238 9 0.42139358668573396 0.6600635734455286 >10 2.9673218409543924 11.331198514857128 >50 0.9035193275103581 11.518431499670733 >100 1.546021837534584 46.792771115020315 >500 0.007170787743666686 0.8626327300216027 >1k 0.006095169582116683 2.5689906584389006 >5k 7.170787743666687E-4 0.9167344789313777 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source ACTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTCTGC 8694 0.5397907891599777 No Hit GCCCTGCTAGAGGACTTGCGTCTGTATCTATGCTCTGCCCCATGCAGCTCC 5997 0.37234016132877695 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4350 0.2700816577922594 No Hit ATCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTCTG 3813 0.23674054279583567 No Hit ATGCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTCT 3625 0.22506804816021614 No Hit CTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTCTGCT 3071 0.19067144162759278 Illumina Single End Adapter 2 (95% over 21bp) ATGCCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTC 2969 0.184338492410395 No Hit ATTGCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTC 2934 0.1821654216005722 No Hit ATGTCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTC 2744 0.17036875149010572 No Hit CCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTCTGC 2660 0.16515338154653103 No Hit ATATCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTC 2507 0.15565395772073432 No Hit ATGGCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTC 2454 0.15236330763728842 No Hit ATAGCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTC 2043 0.12684524755622667 No Hit ATTTCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTC 1785 0.11082661130096161 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.2168724668203131 0.0 2 0.0 0.0 0.0 1.0297872129063022 0.0 3 0.0 0.0 0.0 1.3907032305491536 0.0 4 0.0 0.0 0.0 1.8383558173726455 0.0 5 0.0 0.0 0.0 3.5804135540014306 0.0 6 0.0 0.0 0.0 3.9870261463879837 0.0 7 0.0 0.0 0.0 4.566304736549313 0.0 8 0.0 0.0 0.0 6.420555014702376 0.0 9 0.0 0.0 0.0 6.6257549868870695 0.0 10 0.0 0.0 0.0 7.040501072876102 0.0 11 0.0 0.0 0.0 7.352429865691806 0.0 12 0.0 0.0 0.0 8.231778490820949 0.0 13 6.208773742350791E-5 0.0 0.0 9.071266788524198 0.0 14 6.208773742350791E-5 0.0 0.0 9.406230131924024 0.0 15 6.208773742350791E-5 0.0 0.0 9.587588412938091 0.0 16 6.208773742350791E-5 0.0 0.0 9.703382043232933 0.0 17 6.208773742350791E-5 0.0 0.0 9.885237026146388 0.0 18 0.0021730708098227766 0.0 0.0 10.284088651355002 0.0 19 0.0021730708098227766 0.0 0.0 10.809288822220456 0.0 20 0.002235158547246285 0.0 0.0 11.404834399586743 0.0 21 0.002235158547246285 0.0 0.0 11.764260311531432 0.0 22 0.0022972462846697927 0.0 0.0 12.22246781371692 0.0 23 0.0023593340220933005 0.0 0.0 12.83347323770166 0.0 24 0.0024835094969403162 0.0 0.0 13.335452594770722 0.0 25 0.0024835094969403162 0.0 0.0 13.872511523484066 0.0 26 0.002545597234363824 0.0 0.0 14.251184634030041 0.0 27 0.002545597234363824 0.0 0.0 14.616198442342844 0.0 28 0.002607684971787332 0.0 0.0 14.958488138758643 0.0 29 0.002607684971787332 0.0 0.0 15.308662977827227 0.0 30 0.002607684971787332 0.0 0.0 15.697145950886116 0.0 31 0.002607684971787332 0.0 0.0 16.043347174759596 0.0 32 0.00266977270921084 0.0 0.0 16.427794444885958 0.0 33 0.00266977270921084 0.0 0.0 16.7952917626957 0.0 34 0.00266977270921084 0.0 0.0 17.167569836287054 0.0 35 0.002731860446634348 0.0 0.0 17.555307756496862 0.0 36 0.002731860446634348 0.0 0.0 17.936961078439165 0.0 37 0.002731860446634348 0.0 0.0 18.35158298895335 0.0 38 0.002731860446634348 0.0 0.0 18.753166474608598 0.0 39 0.002731860446634348 0.0 0.0 19.160337856631966 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TGATCGC 40 6.8175723E-9 45.000004 26 GGTCGAA 30 2.1660471E-6 45.000004 32 CGACCGT 20 7.0341304E-4 45.000004 44 CGATTGT 80 0.0 45.000004 32 TAACGCG 35 1.2123382E-7 45.000004 3 ATCCGAT 20 7.0341304E-4 45.000004 20 ATTCCGA 20 7.0341304E-4 45.000004 1 ACCTAGC 20 7.0341304E-4 45.000004 13 GCCGAAC 20 7.0341304E-4 45.000004 34 CTACGAT 30 2.1660471E-6 45.000004 12 TACGACA 35 1.2123382E-7 45.000004 17 GTGTCGA 30 2.1660471E-6 45.000004 20 CGTAATG 35 1.2123382E-7 45.000004 3 CAGTCGA 20 7.0341304E-4 45.000004 9 ACGTACT 30 2.1660471E-6 45.000004 39 CCGCGAA 40 6.8175723E-9 45.000004 44 CGCAATA 35 1.2123382E-7 45.000004 45 CGATCAT 20 7.0341304E-4 45.000004 25 TCGAAGT 20 7.0341304E-4 45.000004 2 TCGAACG 35 1.2123382E-7 45.000004 2 >>END_MODULE