SRR1545670_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545670_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2406208
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ACTGTCTCTTATACACATCTGACGCACCATAGATCGTATGCCGTCTTCTGC	9208	0.38267680931989256	Illumina Single End Adapter 2 (95% over 21bp)
GGGACTGTCTAGGGCACTCAGTGCCTCAAGTGGCAGGCAGCATAGAGAACA	6529	0.27133980104795596	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6365	0.26452409766736706	No Hit
ATCTGTCTCTTATACACATCTGACGCACCATAGATCGTATGCCGTCTTCTG	4203	0.17467317871106738	No Hit
ATGCTGTCTCTTATACACATCTGACGCACCATAGATCGTATGCCGTCTTCT	3857	0.16029370694470305	No Hit
ATTGCTGTCTCTTATACACATCTGACGCACCATAGATCGTATGCCGTCTTC	3610	0.15002859270686492	No Hit
ATGCCTGTCTCTTATACACATCTGACGCACCATAGATCGTATGCCGTCTTC	3562	0.14803375269303404	No Hit
CTGTCTCTTATACACATCTGACGCACCATAGATCGTATGCCGTCTTCTGCT	3303	0.13726992845173816	Illumina Single End Adapter 2 (95% over 22bp)
ATGTCTGTCTCTTATACACATCTGACGCACCATAGATCGTATGCCGTCTTC	3031	0.12596583504002978	No Hit
ATATCTGTCTCTTATACACATCTGACGCACCATAGATCGTATGCCGTCTTC	2816	0.11703061414474558	No Hit
CCTGTCTCTTATACACATCTGACGCACCATAGATCGTATGCCGTCTTCTGC	2630	0.10930060909115089	Illumina Single End Adapter 2 (95% over 21bp)
ATGGCTGTCTCTTATACACATCTGACGCACCATAGATCGTATGCCGTCTTC	2475	0.10285893821315531	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTAC	35	1.2126657E-7	45.000004	2
CCTTACG	20	7.034828E-4	45.0	37
CGTAGAT	25	3.892082E-5	45.0	31
ACGTATG	20	7.034828E-4	45.0	3
ACGTATC	20	7.034828E-4	45.0	12
ACGGGTA	165	0.0	40.90909	7
CGCGAAT	50	1.0822987E-9	40.5	4
CGGTAAG	50	1.0822987E-9	40.5	3
CGCCCGT	50	1.0822987E-9	40.5	25
TACACAA	2020	0.0	39.987625	32
ATACGTA	125	0.0	39.6	1
ATTACGT	245	0.0	39.489796	1
ATCGGTT	385	0.0	39.15584	1
ATTGTTT	4435	0.0	39.114994	1
TCGTTGC	185	0.0	38.91892	2
GGACTAA	2505	0.0	38.353294	10
GCATAGA	885	0.0	38.135593	40
ACTAATC	2460	0.0	37.957317	12
CACGTTA	30	1.1402929E-4	37.500004	12
CCGTTTA	30	1.1402929E-4	37.500004	42