##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545670_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2406208 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.84823755884778 31.0 31.0 34.0 31.0 34.0 2 32.50575885376493 33.0 31.0 34.0 31.0 34.0 3 32.4926589887491 34.0 31.0 34.0 31.0 34.0 4 35.98485874870335 37.0 35.0 37.0 35.0 37.0 5 35.760811201691624 37.0 35.0 37.0 35.0 37.0 6 35.76856157073703 37.0 35.0 37.0 35.0 37.0 7 35.75129290568396 37.0 35.0 37.0 33.0 37.0 8 35.713201435619865 37.0 35.0 37.0 33.0 37.0 9 37.872853469026786 39.0 38.0 39.0 35.0 39.0 10 37.79392346796287 39.0 38.0 39.0 35.0 39.0 11 37.62824452416416 39.0 37.0 39.0 35.0 39.0 12 37.15294687741043 39.0 37.0 39.0 33.0 39.0 13 36.91583395949145 39.0 37.0 39.0 33.0 39.0 14 37.62425692209485 40.0 36.0 41.0 33.0 41.0 15 37.52731102215602 40.0 36.0 41.0 32.0 41.0 16 37.46440041758651 40.0 36.0 41.0 32.0 41.0 17 37.5568076409022 40.0 36.0 41.0 32.0 41.0 18 37.654417240737295 40.0 36.0 41.0 33.0 41.0 19 37.62460934383063 40.0 35.0 41.0 33.0 41.0 20 37.58015516530574 40.0 35.0 41.0 32.0 41.0 21 37.553999487991064 40.0 35.0 41.0 32.0 41.0 22 37.46462068117137 39.0 35.0 41.0 32.0 41.0 23 37.39379679562199 39.0 35.0 41.0 32.0 41.0 24 37.39509053248929 39.0 35.0 41.0 32.0 41.0 25 37.31460663417294 39.0 35.0 41.0 32.0 41.0 26 37.2242977331968 39.0 35.0 41.0 32.0 41.0 27 37.13565577040721 39.0 35.0 41.0 32.0 41.0 28 37.04190369244886 39.0 35.0 41.0 31.0 41.0 29 36.98764071933931 39.0 35.0 41.0 31.0 41.0 30 36.89374775580499 39.0 35.0 41.0 31.0 41.0 31 36.75562835798069 39.0 35.0 41.0 31.0 41.0 32 36.65041343059286 39.0 35.0 41.0 31.0 41.0 33 36.551702928425144 39.0 35.0 41.0 30.0 41.0 34 36.47975652977631 39.0 35.0 41.0 30.0 41.0 35 36.37979966819161 38.0 35.0 41.0 30.0 41.0 36 36.248798940075005 38.0 35.0 41.0 30.0 41.0 37 36.1304031072958 38.0 35.0 41.0 30.0 41.0 38 36.02542506715962 38.0 35.0 40.0 30.0 41.0 39 35.952213191877014 38.0 35.0 40.0 29.0 41.0 40 35.87367634053249 38.0 35.0 40.0 29.0 41.0 41 35.79480576907732 38.0 35.0 40.0 29.0 41.0 42 35.64621553913876 38.0 34.0 40.0 29.0 41.0 43 35.5032303940474 37.0 34.0 40.0 28.0 41.0 44 35.43780753783547 37.0 34.0 40.0 28.0 41.0 45 35.415572136739634 37.0 34.0 40.0 28.0 41.0 46 35.34259008365029 37.0 34.0 40.0 28.0 41.0 47 35.23122481514483 37.0 34.0 40.0 28.0 41.0 48 35.16266715096949 36.0 34.0 40.0 28.0 41.0 49 35.1076689961965 36.0 34.0 40.0 28.0 41.0 50 34.98638480131393 36.0 34.0 40.0 28.0 41.0 51 34.806821355427296 36.0 34.0 40.0 27.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 9.0 10 12.0 11 34.0 12 23.0 13 35.0 14 59.0 15 89.0 16 191.0 17 369.0 18 786.0 19 1434.0 20 2611.0 21 4232.0 22 6547.0 23 9396.0 24 12777.0 25 18048.0 26 23813.0 27 29213.0 28 34433.0 29 41309.0 30 49880.0 31 61579.0 32 76499.0 33 100208.0 34 162790.0 35 260615.0 36 190275.0 37 262783.0 38 382579.0 39 673282.0 40 296.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 2.818792057876958 90.194613267016 3.4828244274809164 3.5037702476261403 2 3.786164787084076 3.0412167194191024 89.8612256297045 3.3113928637923236 3 28.661404167885735 16.22918716918903 41.78408516636966 13.325323496555578 4 28.043128441099025 16.0897977232226 41.44500392318536 14.422069912493019 5 24.78480663350799 14.139010426363804 45.29467111737638 15.781511822751815 6 23.17276810649786 14.839240830385403 46.379739407399526 15.608251655717211 7 23.787926895762958 17.240321701199562 43.73146461153816 15.240286791499322 8 26.319669787483047 19.056249501289997 42.705742811926484 11.918337899300475 9 81.38107761257547 3.9779187834135707 9.503085352554725 5.137918251456234 10 82.05770240976675 4.486644546107402 9.4147305636088 4.040922480517063 11 75.70708766656914 7.202910139106844 10.355921017634385 6.73408117668963 12 44.43830292310557 21.461153815463998 17.011455368779423 17.08908789265101 13 35.00777987605394 23.188311234938958 23.235356211931805 18.5685526770753 14 29.260230204537596 22.183119663802962 27.556221241056466 21.000428890602972 15 24.254968814001117 24.25455322233157 31.087337420538873 20.403140543128444 16 20.43701126419661 28.977461632577068 30.335365853658537 20.250161249567785 17 18.962658257307762 22.451591882331037 35.520329082107615 23.065420778253586 18 23.97988868792723 20.58920093358513 33.05994328004894 22.370967098438705 19 24.321920631965316 20.680880455887436 28.20811833390962 26.789080578237623 20 25.603065071681254 21.162592760060644 29.93926543341224 23.295076734845864 21 26.9460911109929 24.091599728701755 26.542593159028645 22.419716001276697 22 27.918076907731997 22.10145590073676 26.25342447535708 23.72704271617416 23 26.418622164002446 24.154977458307844 27.882502260818683 21.543898116871027 24 29.76425978136553 19.93684668989547 25.868170997685986 24.43072253105301 25 27.886034790009838 22.62796898688725 24.18710269436391 25.298893528738997 26 26.484909035295367 21.467263013006356 28.818123786472327 23.229704165225947 27 27.893889472564297 21.78706080272362 24.9956778466367 25.323371878075378 28 24.1381875548581 24.711330026331886 24.335344242891722 26.81513817591829 29 22.372546346782986 25.351424315769876 26.067654999069074 26.20837433837806 30 23.204560869218287 23.651238795648588 27.50439695986382 25.639803375269306 31 23.380688618772773 23.145629970476367 26.84551792696226 26.628163483788605 32 24.372082546479774 25.73514010426364 26.844104915285794 23.048672433970797 33 25.6190237917919 24.433797909407666 25.64645284198207 24.300725456818366 34 27.5309948267149 23.74915219299412 23.930017687581458 24.789835292709526 35 27.044295422507115 26.02829846796287 22.791379631353564 24.13602647817645 36 23.649742665638215 25.77819540122882 26.35661588690587 24.215446046227093 37 24.351552318004096 25.526970236986994 26.91475549910897 23.20672194589994 38 26.132653536186396 26.217392677607254 23.250899340372904 24.399054445833443 39 24.163871120036173 27.90893389100194 24.821877410431682 23.1053175785302 40 25.68107162805543 24.356456299704764 26.805413330850865 23.15705874138894 41 23.85662419873926 26.397136074686813 23.87042184216826 25.87581788440567 42 27.008388302258158 22.98841164188632 26.065826395723064 23.937373660132458 43 23.723343950315183 23.698117535973616 27.08365195361332 25.49488656009788 44 22.651699271218448 25.017496409287975 24.97917885735564 27.351625462137935 45 22.618368819320693 21.984840878261565 26.959764076921033 28.437026225496716 46 24.733356384817938 23.291959797324253 26.314142418278053 25.660541399579756 47 22.459114091549857 24.589561667154296 25.654307524536534 27.297016716759316 48 22.07190733303189 24.54546739101524 25.98690553767588 27.39571973827699 49 23.0862834800649 25.02323157432774 27.460842952895177 24.429641992712185 50 22.419674442109745 24.327198646168576 28.776107468681012 24.477019443040668 51 22.994853312764317 23.69633049179456 26.638387038859484 26.670429156581644 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 912.0 1 1709.0 2 2506.0 3 6356.5 4 10207.0 5 6989.5 6 3772.0 7 3948.5 8 4125.0 9 4359.0 10 4593.0 11 4811.0 12 5029.0 13 4973.5 14 4918.0 15 4831.5 16 4745.0 17 4966.5 18 5188.0 19 5737.5 20 6287.0 21 6944.0 22 7601.0 23 7713.0 24 7825.0 25 10116.5 26 15815.5 27 19223.0 28 20210.0 29 21197.0 30 27528.0 31 33859.0 32 40481.5 33 47104.0 34 53899.5 35 60695.0 36 66682.0 37 72669.0 38 82730.5 39 92792.0 40 105901.0 41 119010.0 42 143734.5 43 168459.0 44 184636.5 45 200814.0 46 201456.5 47 202099.0 48 182739.0 49 163379.0 50 155384.0 51 147389.0 52 150877.5 53 154366.0 54 158130.0 55 161894.0 56 156190.5 57 150487.0 58 141356.0 59 132225.0 60 119266.0 61 106307.0 62 95556.0 63 84805.0 64 72572.5 65 60340.0 66 52508.5 67 44677.0 68 38950.5 69 33224.0 70 27779.0 71 22334.0 72 17677.0 73 13020.0 74 10062.0 75 5295.0 76 3486.0 77 2753.5 78 2021.0 79 1293.5 80 566.0 81 409.0 82 252.0 83 198.5 84 145.0 85 110.5 86 76.0 87 60.0 88 44.0 89 29.0 90 14.0 91 11.0 92 8.0 93 6.5 94 5.0 95 3.5 96 2.0 97 1.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2406208.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 16.542410181186604 #Duplication Level Percentage of deduplicated Percentage of total 1 72.7624744387091 12.036666979632313 2 10.4787220307304 3.466866360139579 3 4.39239733523203 2.179825151944777 4 2.3453103172763936 1.5518834108222 5 1.4063843569376187 1.163249345243322 6 0.9470406879116424 0.9399801310624512 7 0.6895222893648949 0.7984452377821453 8 0.4840633578100252 0.6406059694860748 9 0.3746551717735836 0.557792957518339 >10 3.0757104876594896 11.458165846256101 >50 1.3447665658557908 16.448845040996645 >100 1.684813955631955 45.00030425707121 >500 0.008331913723791821 0.9203698287059893 >1k 0.005049644681085952 1.91387305594457 >5k 7.574467021628929E-4 0.9231264273942537 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source ACTGTCTCTTATACACATCTGACGCACCATAGATCGTATGCCGTCTTCTGC 9208 0.38267680931989256 Illumina Single End Adapter 2 (95% over 21bp) GGGACTGTCTAGGGCACTCAGTGCCTCAAGTGGCAGGCAGCATAGAGAACA 6529 0.27133980104795596 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6365 0.26452409766736706 No Hit ATCTGTCTCTTATACACATCTGACGCACCATAGATCGTATGCCGTCTTCTG 4203 0.17467317871106738 No Hit ATGCTGTCTCTTATACACATCTGACGCACCATAGATCGTATGCCGTCTTCT 3857 0.16029370694470305 No Hit ATTGCTGTCTCTTATACACATCTGACGCACCATAGATCGTATGCCGTCTTC 3610 0.15002859270686492 No Hit ATGCCTGTCTCTTATACACATCTGACGCACCATAGATCGTATGCCGTCTTC 3562 0.14803375269303404 No Hit CTGTCTCTTATACACATCTGACGCACCATAGATCGTATGCCGTCTTCTGCT 3303 0.13726992845173816 Illumina Single End Adapter 2 (95% over 22bp) ATGTCTGTCTCTTATACACATCTGACGCACCATAGATCGTATGCCGTCTTC 3031 0.12596583504002978 No Hit ATATCTGTCTCTTATACACATCTGACGCACCATAGATCGTATGCCGTCTTC 2816 0.11703061414474558 No Hit CCTGTCTCTTATACACATCTGACGCACCATAGATCGTATGCCGTCTTCTGC 2630 0.10930060909115089 Illumina Single End Adapter 2 (95% over 21bp) ATGGCTGTCTCTTATACACATCTGACGCACCATAGATCGTATGCCGTCTTC 2475 0.10285893821315531 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 4.1559166954810226E-5 0.0 0.0 0.14903117269994948 0.0 2 4.1559166954810226E-5 0.0 0.0 0.6983186823416762 0.0 3 8.311833390962045E-5 0.0 0.0 0.9623856291725403 0.0 4 8.311833390962045E-5 0.0 0.0 1.2754923930100805 0.0 5 8.311833390962045E-5 0.0 0.0 2.5680240444716333 0.0 6 1.2467750086443067E-4 0.0 0.0 2.8756865574380934 0.0 7 1.2467750086443067E-4 0.0 0.0 3.327351583902971 0.0 8 1.2467750086443067E-4 0.0 0.0 4.710731574327739 0.0 9 1.2467750086443067E-4 0.0 0.0 4.886402173045722 0.0 10 1.2467750086443067E-4 0.0 0.0 5.221659972870176 0.0 11 2.077958347740511E-4 0.0 0.0 5.471596802936404 0.0 12 2.077958347740511E-4 0.0 0.0 6.178227318669043 0.0 13 2.077958347740511E-4 0.0 0.0 6.826965914833631 0.0 14 2.4935500172886134E-4 0.0 0.0 7.097432973375535 0.0 15 2.9091416868367155E-4 0.0 0.0 7.2643345878660535 0.0 16 2.9091416868367155E-4 0.0 0.0 7.421137324786552 0.0 17 3.324733356384818E-4 0.0 0.0 7.581680386732984 0.0 18 3.324733356384818E-4 0.0 0.0 7.9030574247945315 0.0 19 3.324733356384818E-4 0.0 0.0 8.283947189935366 0.0 20 3.324733356384818E-4 0.0 0.0 8.705564938691916 0.0 21 3.324733356384818E-4 0.0 0.0 8.988333510652446 0.0 22 3.324733356384818E-4 0.0 0.0 9.29420897943985 0.0 23 3.324733356384818E-4 0.0 0.0 9.740429755033647 0.0 24 3.324733356384818E-4 0.0 0.0 10.131085924408863 0.0 25 3.74032502593292E-4 0.0 0.0 10.547799691464744 0.0 26 4.155916695481022E-4 0.0 0.0 10.870465063701891 0.0 27 4.571508365029125E-4 0.0 0.0 11.161545469053381 0.0 28 5.40269170412533E-4 0.0 0.0 11.437165864297683 0.0 29 5.40269170412533E-4 0.0 0.0 11.715570723727957 0.0 30 5.818283373673431E-4 0.0 0.0 11.98429229725776 0.0 31 5.818283373673431E-4 0.0 0.0 12.293741854403278 0.0 32 6.649466712769636E-4 0.0 0.0 12.645789557677475 0.0 33 6.649466712769636E-4 0.0 0.0 12.950916961459692 0.0 34 6.649466712769636E-4 0.0 0.0 13.27715642205495 0.0 35 6.649466712769636E-4 0.0 0.0 13.596372383434849 0.0 36 6.649466712769636E-4 0.0 0.0 13.929261310742879 0.0 37 7.065058382317738E-4 0.0 0.0 14.318088876772084 0.0 38 7.896241721413943E-4 0.0 0.0 14.647736189057637 0.0 39 8.311833390962044E-4 0.0 0.0 14.985820012235019 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGTTAC 35 1.2126657E-7 45.000004 2 CCTTACG 20 7.034828E-4 45.0 37 CGTAGAT 25 3.892082E-5 45.0 31 ACGTATG 20 7.034828E-4 45.0 3 ACGTATC 20 7.034828E-4 45.0 12 ACGGGTA 165 0.0 40.90909 7 CGCGAAT 50 1.0822987E-9 40.5 4 CGGTAAG 50 1.0822987E-9 40.5 3 CGCCCGT 50 1.0822987E-9 40.5 25 TACACAA 2020 0.0 39.987625 32 ATACGTA 125 0.0 39.6 1 ATTACGT 245 0.0 39.489796 1 ATCGGTT 385 0.0 39.15584 1 ATTGTTT 4435 0.0 39.114994 1 TCGTTGC 185 0.0 38.91892 2 GGACTAA 2505 0.0 38.353294 10 GCATAGA 885 0.0 38.135593 40 ACTAATC 2460 0.0 37.957317 12 CACGTTA 30 1.1402929E-4 37.500004 12 CCGTTTA 30 1.1402929E-4 37.500004 42 >>END_MODULE