SRR1545668_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545668_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2065514
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ACTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCTGC	7971	0.385908785900265	TruSeq Adapter, Index 13 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4958	0.24003710456574007	No Hit
ATGCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCT	3817	0.18479661721005036	No Hit
ATCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCTG	3678	0.17806705740072448	No Hit
ATGCCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTC	3277	0.15865300356230944	No Hit
CTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCTGCT	2995	0.14500022754626693	TruSeq Adapter, Index 13 (95% over 22bp)
ATTGCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTC	2830	0.13701190115390163	No Hit
ATGTCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTC	2571	0.12447264942285552	No Hit
ATATCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTC	2421	0.11721053452070525	No Hit
CCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCTGC	2144	0.10379982900140111	TruSeq Adapter, Index 19 (95% over 21bp)
ATGGCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTC	2113	0.1022989919216234	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGATTAC	30	2.1663454E-6	45.000004	20
TGGCACG	30	2.1663454E-6	45.000004	34
CGTATAT	20	7.034595E-4	45.0	20
GATCGAC	25	3.8918908E-5	45.0	42
CTATCGG	25	3.8918908E-5	45.0	17
ATCGTAC	35	1.2125565E-7	45.0	1
GTTACGT	25	3.8918908E-5	45.0	24
CCCGTAG	35	1.2125565E-7	45.0	41
CCGTAAA	25	3.8918908E-5	45.0	27
CTACGAT	45	3.8562575E-10	45.0	40
CGTAGAC	25	3.8918908E-5	45.0	30
TCTCGAC	25	3.8918908E-5	45.0	26
AACGATC	20	7.034595E-4	45.0	45
ACCGTAT	35	1.2125565E-7	45.0	7
CGCACAT	20	7.034595E-4	45.0	29
GCGTAGT	20	7.034595E-4	45.0	11
ATCGAAT	75	0.0	45.0	1
TACGTAC	25	3.8918908E-5	45.0	27
TAATCGC	20	7.034595E-4	45.0	39
ATTCGAT	140	0.0	43.392857	1