##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545668_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2065514 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.870730481613776 31.0 31.0 34.0 31.0 34.0 2 32.536007986389826 34.0 31.0 34.0 31.0 34.0 3 32.5304515002077 34.0 31.0 34.0 31.0 34.0 4 36.0041190715725 37.0 35.0 37.0 35.0 37.0 5 35.78252822299921 37.0 35.0 37.0 35.0 37.0 6 35.7879394668833 37.0 35.0 37.0 35.0 37.0 7 35.77386403577996 37.0 35.0 37.0 35.0 37.0 8 35.74004533496263 37.0 35.0 37.0 33.0 37.0 9 37.887887470140605 39.0 38.0 39.0 35.0 39.0 10 37.810320336729745 39.0 38.0 39.0 35.0 39.0 11 37.648187327706324 39.0 37.0 39.0 35.0 39.0 12 37.223353605930534 39.0 37.0 39.0 33.0 39.0 13 37.01922427056897 39.0 37.0 39.0 33.0 39.0 14 37.75764724906246 40.0 36.0 41.0 33.0 41.0 15 37.68149429149354 40.0 36.0 41.0 33.0 41.0 16 37.62097037347605 40.0 36.0 41.0 32.0 41.0 17 37.728453547155816 40.0 36.0 41.0 33.0 41.0 18 37.76136642017435 40.0 36.0 41.0 33.0 41.0 19 37.73425791352661 40.0 36.0 41.0 33.0 41.0 20 37.68503675114282 40.0 36.0 41.0 33.0 41.0 21 37.65162085563206 40.0 36.0 41.0 33.0 41.0 22 37.603472065548814 40.0 35.0 41.0 33.0 41.0 23 37.5191259899473 40.0 35.0 41.0 32.0 41.0 24 37.49690198178274 40.0 35.0 41.0 32.0 41.0 25 37.44188710413001 39.0 35.0 41.0 32.0 41.0 26 37.32681840936445 39.0 35.0 41.0 32.0 41.0 27 37.258615531049415 39.0 35.0 41.0 32.0 41.0 28 37.177064401403236 39.0 35.0 41.0 32.0 41.0 29 37.09560961581476 39.0 35.0 41.0 31.0 41.0 30 37.01782849208478 39.0 35.0 41.0 31.0 41.0 31 36.924078461825964 39.0 35.0 41.0 31.0 41.0 32 36.78133481545029 39.0 35.0 41.0 31.0 41.0 33 36.69008827826875 39.0 35.0 41.0 31.0 41.0 34 36.622578689856375 39.0 35.0 41.0 31.0 41.0 35 36.53423215722576 39.0 35.0 41.0 30.0 41.0 36 36.41953140961523 39.0 35.0 41.0 30.0 41.0 37 36.272887523396115 38.0 35.0 41.0 30.0 41.0 38 36.19648765392053 38.0 35.0 41.0 30.0 41.0 39 36.14287242787994 38.0 35.0 41.0 30.0 41.0 40 36.073263604119845 38.0 35.0 40.0 30.0 41.0 41 35.9870414821686 38.0 35.0 40.0 30.0 41.0 42 35.8721688645054 38.0 35.0 40.0 29.0 41.0 43 35.759151475129194 38.0 35.0 40.0 29.0 41.0 44 35.70831909151911 38.0 35.0 40.0 29.0 41.0 45 35.675556302208555 38.0 35.0 40.0 29.0 41.0 46 35.603633284499644 37.0 34.0 40.0 29.0 41.0 47 35.51216065347415 37.0 34.0 40.0 29.0 41.0 48 35.448182389468194 37.0 34.0 40.0 29.0 41.0 49 35.39389033431872 37.0 34.0 40.0 29.0 41.0 50 35.292940643345915 37.0 34.0 40.0 28.0 41.0 51 35.1119043492322 36.0 34.0 40.0 28.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 5.0 10 16.0 11 28.0 12 39.0 13 39.0 14 54.0 15 86.0 16 139.0 17 317.0 18 610.0 19 1126.0 20 1953.0 21 3166.0 22 4821.0 23 7226.0 24 10023.0 25 13916.0 26 19153.0 27 23652.0 28 27937.0 29 33484.0 30 40614.0 31 50388.0 32 63172.0 33 82307.0 34 133568.0 35 220189.0 36 161052.0 37 223637.0 38 330760.0 39 611798.0 40 237.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 2.413442852481271 90.75121253111817 3.087512357698859 3.7478322587017083 2 3.307844923830097 3.1415909066702037 89.99028813167087 3.5602760378288405 3 29.112559876137368 15.509844038820361 42.10554854626984 13.27204753877243 4 28.2045050287725 14.92224211503771 42.86579514832628 14.007457707863516 5 25.497721148343704 14.503024428786249 45.150650152940145 14.848604269929904 6 24.247911173683644 14.367900677506906 45.52910316754086 15.855084981268586 7 23.95776547629307 17.145369142983295 43.3543418248436 15.542523555880038 8 25.852935395257546 19.377355951109507 42.5776828431083 12.192025810524644 9 80.57156717407871 4.637586576513159 10.020072485589543 4.770773763818594 10 81.4114065554627 4.758186097988201 9.838761683532525 3.9916456630165666 11 74.6931272312848 7.610357518758043 10.953641563310633 6.7428736866465195 12 42.30651547266201 21.48796861217111 17.980754427227318 18.224761487939563 13 34.06992157884188 23.730848592650545 23.72847630178251 18.470753526725066 14 27.333777452004682 23.882675208204834 28.19530634989644 20.58824098989404 15 23.832469787181303 24.816583184621358 32.5453615903838 18.80558543781354 16 18.963318573488245 29.827732951701126 31.736265162085566 19.472683312725064 17 19.510543138414942 23.54450272426137 37.09599644446854 19.848957692855144 18 23.31700487142668 21.90704105612453 33.90255403739699 20.87340003505181 19 23.762462999524573 21.715175980409718 29.473293330376844 25.049067689688865 20 25.35572259495699 21.608035578553327 31.29405077864396 21.74219104784572 21 26.613569310108765 23.564110434497177 28.493682444176123 21.328637811217934 22 26.5921702781971 23.437555978802372 26.650944994805165 23.319328748195364 23 25.97125945406325 23.815137539614835 28.890532816528964 21.323070189792954 24 29.089272694351138 20.16263264252869 27.47388785551684 23.27420680760334 25 26.87708725285813 23.64292858823518 25.715003626216042 23.764980532690654 26 26.378954584669966 22.11313987704755 28.988135640813862 22.51976989746862 27 27.88695695115114 22.33787812621943 27.034917216731525 22.740247705897904 28 23.899668557075866 25.18690263053167 25.893651652808934 25.019777159583523 29 22.046183177649727 24.76487692651805 29.081235953859423 24.107703941972797 30 23.581733166659728 23.094687327222182 29.841288899518474 23.482290606599616 31 23.776309431938007 24.099860857878475 28.741804703332924 23.382025006850597 32 24.00259693228901 24.59005361377362 29.44952200759714 21.957827446340232 33 26.80553121402227 23.10451538938976 27.719105268712774 22.370848127875192 34 27.300081238858702 23.187932882565793 26.53136216941643 22.980623709159076 35 26.66750261678207 23.07004455065422 27.460525564096876 22.80192726846683 36 24.447474091194735 23.865197718340326 27.900367656670443 23.786960533794492 37 23.418722894156126 25.075889100727473 29.34523803760226 22.16014996751414 38 26.61826547774549 24.174660641370625 27.78678817960082 21.42028570128307 39 24.618182205494612 25.70212547578956 28.25185401793452 21.427838300781307 40 25.278889419292245 25.09065540102851 26.94515747654095 22.6852977031383 41 23.4286477845224 25.814639842673543 25.484019958228316 25.272692414575744 42 25.55659269315047 22.754094138311334 27.830264040815024 23.85904912772317 43 22.558888489741534 23.067188118792707 28.83766462004131 25.536258771424446 44 22.626377744232187 24.59625061849012 27.660621036700796 25.116750600576903 45 22.43465791081542 22.310040019094522 28.48002966816008 26.77527240192998 46 24.71094361984475 24.006421646137476 27.5058411610863 23.776793572931485 47 22.328001649952505 24.44214854026649 28.10457832771891 25.125271482062097 48 22.388858172832524 24.153358437657648 27.72273632616385 25.735047063345977 49 23.157528828175455 23.88809758733177 29.961113795403953 22.993259789088818 50 23.223468831486983 22.998488511818366 30.97979485977824 22.79824779691641 51 23.33588637017227 22.68655646972134 28.647155139108232 25.33040202099816 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 672.0 1 1374.5 2 2077.0 3 5298.5 4 8520.0 5 5955.5 6 3391.0 7 3415.5 8 3440.0 9 3789.0 10 4138.0 11 4271.5 12 4405.0 13 4334.5 14 4264.0 15 4915.5 16 5567.0 17 5847.5 18 6128.0 19 6685.0 20 7242.0 21 7975.5 22 8709.0 23 10249.5 24 11790.0 25 13466.0 26 19311.0 27 23480.0 28 25276.0 29 27072.0 30 29981.5 31 32891.0 32 36463.5 33 40036.0 34 47059.0 35 54082.0 36 62841.5 37 71601.0 38 77739.0 39 83877.0 40 104330.5 41 124784.0 42 140107.0 43 155430.0 44 170833.0 45 186236.0 46 187601.5 47 188967.0 48 165771.5 49 142576.0 50 137101.0 51 131626.0 52 124247.0 53 116868.0 54 118860.0 55 120852.0 56 117437.0 57 114022.0 58 106598.0 59 99174.0 60 92205.5 61 85237.0 62 72553.0 63 59869.0 64 51770.5 65 43672.0 66 37139.0 67 30606.0 68 24912.0 69 19218.0 70 15827.5 71 12437.0 72 9697.0 73 6957.0 74 6090.0 75 3322.0 76 1421.0 77 1206.0 78 991.0 79 800.0 80 609.0 81 350.5 82 92.0 83 64.5 84 37.0 85 47.5 86 58.0 87 34.0 88 10.0 89 10.5 90 11.0 91 8.0 92 5.0 93 3.0 94 1.0 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2065514.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 16.546961224948735 #Duplication Level Percentage of deduplicated Percentage of total 1 72.75245618302134 12.03832071480236 2 10.958680068161936 3.6266570832898823 3 4.466417081886168 2.217168908052573 4 2.343704837266809 1.5512477225991472 5 1.3855005856427265 1.1462912233886982 6 0.9188507536867103 0.9122512675661351 7 0.6478516836778135 0.7503983682534174 8 0.48969441606076186 0.6482363611705072 9 0.34782623153422176 0.5179920449595128 >10 2.804692505672659 10.313415814753075 >50 1.094137283320147 13.419289749415352 >100 1.7781520100867156 49.681657475261126 >500 0.006458534624503818 0.7248155315393965 >1k 0.005284255601866759 2.065051475187406 >5k 2.935697556592644E-4 0.38720625976144557 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source ACTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCTGC 7971 0.385908785900265 TruSeq Adapter, Index 13 (95% over 21bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4958 0.24003710456574007 No Hit ATGCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCT 3817 0.18479661721005036 No Hit ATCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCTG 3678 0.17806705740072448 No Hit ATGCCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTC 3277 0.15865300356230944 No Hit CTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCTGCT 2995 0.14500022754626693 TruSeq Adapter, Index 13 (95% over 22bp) ATTGCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTC 2830 0.13701190115390163 No Hit ATGTCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTC 2571 0.12447264942285552 No Hit ATATCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTC 2421 0.11721053452070525 No Hit CCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCTGC 2144 0.10379982900140111 TruSeq Adapter, Index 19 (95% over 21bp) ATGGCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTC 2113 0.1022989919216234 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 4.8414099347668426E-5 0.0 0.0 0.15419890642232392 0.0 2 9.682819869533685E-5 0.0 0.0 0.6900945721016657 0.0 3 9.682819869533685E-5 0.0 0.0 0.9523053341686379 0.0 4 1.4524229804300528E-4 0.0 0.0 1.292511210284704 0.0 5 1.4524229804300528E-4 0.0 0.0 2.554618366179072 0.0 6 1.4524229804300528E-4 0.0 0.0 2.8575453857974336 0.0 7 1.4524229804300528E-4 0.0 0.0 3.308377478922922 0.0 8 1.4524229804300528E-4 0.0 0.0 4.694085830451887 0.0 9 1.4524229804300528E-4 0.0 0.0 4.8870644304516935 0.0 10 1.4524229804300528E-4 0.0 0.0 5.214585812538671 0.0 11 1.4524229804300528E-4 0.0 0.0 5.468905076411973 0.0 12 2.4207049673834213E-4 0.0 0.0 6.169699164469473 0.0 13 2.4207049673834213E-4 0.0 0.0 6.783638358297257 0.0 14 2.4207049673834213E-4 0.0 0.0 7.051465155888558 0.0 15 2.4207049673834213E-4 0.0 0.0 7.212538864418251 0.0 16 2.4207049673834213E-4 0.0 0.0 7.323261909626369 0.0 17 2.4207049673834213E-4 0.0 0.0 7.4875793628123555 0.0 18 2.9048459608601055E-4 0.0 0.0 7.797623255034824 0.0 19 3.38898695433679E-4 0.0 0.0 8.210062967377612 0.0 20 3.38898695433679E-4 0.0 0.0 8.651066998335523 0.0 21 3.38898695433679E-4 0.0 0.0 8.950798687396938 0.0 22 3.38898695433679E-4 0.0 0.0 9.256872623472898 0.0 23 3.38898695433679E-4 0.0 0.0 9.719227272243131 0.0 24 4.3572689412901583E-4 0.0 0.0 10.137767161103726 0.0 25 5.325550928243527E-4 0.0 0.0 10.534811189853954 0.0 26 6.293832915196895E-4 0.0 0.0 10.860105523370938 0.0 27 6.77797390867358E-4 0.0 0.0 11.160515009823222 0.0 28 7.746255895626948E-4 0.0 0.0 11.439477050264486 0.0 29 7.746255895626948E-4 0.0 0.0 11.738579356034382 0.0 30 8.230396889103632E-4 0.0 0.0 12.018073951568471 0.0 31 8.230396889103632E-4 0.0 0.0 12.344191324774366 0.0 32 8.230396889103632E-4 0.0 0.0 12.673552442636554 0.0 33 8.714537882580317E-4 0.0 0.0 12.987517876906184 0.0 34 8.714537882580317E-4 0.0 0.0 13.307438245395577 0.0 35 8.714537882580317E-4 0.0 0.0 13.652630773744454 0.0 36 8.714537882580317E-4 0.0 0.0 13.988769865515314 0.0 37 9.198678876057001E-4 0.0 0.0 14.366254598129085 0.0 38 9.682819869533685E-4 0.0 0.0 14.677992983828723 0.0 39 0.001016696086301037 0.0 0.0 15.02439586466129 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGATTAC 30 2.1663454E-6 45.000004 20 TGGCACG 30 2.1663454E-6 45.000004 34 CGTATAT 20 7.034595E-4 45.0 20 GATCGAC 25 3.8918908E-5 45.0 42 CTATCGG 25 3.8918908E-5 45.0 17 ATCGTAC 35 1.2125565E-7 45.0 1 GTTACGT 25 3.8918908E-5 45.0 24 CCCGTAG 35 1.2125565E-7 45.0 41 CCGTAAA 25 3.8918908E-5 45.0 27 CTACGAT 45 3.8562575E-10 45.0 40 CGTAGAC 25 3.8918908E-5 45.0 30 TCTCGAC 25 3.8918908E-5 45.0 26 AACGATC 20 7.034595E-4 45.0 45 ACCGTAT 35 1.2125565E-7 45.0 7 CGCACAT 20 7.034595E-4 45.0 29 GCGTAGT 20 7.034595E-4 45.0 11 ATCGAAT 75 0.0 45.0 1 TACGTAC 25 3.8918908E-5 45.0 27 TAATCGC 20 7.034595E-4 45.0 39 ATTCGAT 140 0.0 43.392857 1 >>END_MODULE