##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545663_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1296939 Sequences flagged as poor quality 0 Sequence length 52 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.593483579412755 33.0 31.0 34.0 31.0 34.0 2 32.98356360630685 34.0 33.0 34.0 31.0 34.0 3 33.0447160583497 34.0 33.0 34.0 31.0 34.0 4 36.40414082697799 37.0 37.0 37.0 35.0 37.0 5 36.376718565792224 37.0 37.0 37.0 35.0 37.0 6 36.39503939661002 37.0 37.0 37.0 35.0 37.0 7 36.499926365079624 37.0 37.0 37.0 35.0 37.0 8 36.563938627799764 37.0 37.0 37.0 35.0 37.0 9 38.38734820990039 39.0 39.0 39.0 37.0 39.0 10 38.108749910365866 39.0 39.0 39.0 35.0 39.0 11 37.933630648781474 39.0 38.0 39.0 35.0 39.0 12 37.641074098319194 39.0 37.0 39.0 35.0 39.0 13 37.56770750204905 39.0 37.0 39.0 35.0 39.0 14 38.959813838584544 41.0 38.0 41.0 35.0 41.0 15 39.004091942643406 41.0 38.0 41.0 35.0 41.0 16 39.065974575519746 41.0 38.0 41.0 35.0 41.0 17 39.038922416551586 41.0 38.0 41.0 35.0 41.0 18 39.04765759993338 41.0 38.0 41.0 35.0 41.0 19 39.010244892011116 41.0 38.0 41.0 35.0 41.0 20 38.95993489285155 41.0 38.0 41.0 35.0 41.0 21 38.93239928786165 41.0 38.0 41.0 35.0 41.0 22 38.99996838710224 41.0 38.0 41.0 35.0 41.0 23 39.01360819591361 41.0 38.0 41.0 35.0 41.0 24 38.97924651814773 41.0 38.0 41.0 35.0 41.0 25 38.90327841170633 41.0 38.0 41.0 35.0 41.0 26 38.8136859173793 41.0 38.0 41.0 35.0 41.0 27 38.75981214228271 41.0 38.0 41.0 35.0 41.0 28 38.74597417457567 41.0 38.0 41.0 35.0 41.0 29 38.74602120839916 40.0 38.0 41.0 35.0 41.0 30 38.72606190422217 40.0 38.0 41.0 35.0 41.0 31 38.68270211629074 40.0 38.0 41.0 35.0 41.0 32 38.64828106796079 40.0 38.0 41.0 35.0 41.0 33 38.553560344781054 40.0 37.0 41.0 35.0 41.0 34 38.518198619981355 40.0 37.0 41.0 35.0 41.0 35 38.43213828869361 40.0 37.0 41.0 35.0 41.0 36 38.29720827270982 40.0 37.0 41.0 35.0 41.0 37 38.29233294703914 40.0 37.0 41.0 34.0 41.0 38 38.228854248349386 40.0 37.0 41.0 34.0 41.0 39 38.21158666675919 40.0 36.0 41.0 34.0 41.0 40 38.087554618991334 40.0 36.0 41.0 34.0 41.0 41 38.01217790505182 40.0 36.0 41.0 34.0 41.0 42 37.95108328148047 40.0 36.0 41.0 34.0 41.0 43 37.91940484479224 40.0 36.0 41.0 34.0 41.0 44 37.8299634755374 40.0 35.0 41.0 34.0 41.0 45 37.75914210305959 40.0 35.0 41.0 34.0 41.0 46 37.7655895921088 40.0 35.0 41.0 34.0 41.0 47 37.77560162814134 40.0 35.0 41.0 34.0 41.0 48 37.72952852832709 40.0 35.0 41.0 34.0 41.0 49 37.71649321980448 40.0 35.0 41.0 34.0 41.0 50 37.637428591475775 40.0 35.0 41.0 34.0 41.0 51 37.514219250095806 40.0 35.0 41.0 34.0 41.0 52 37.16582661173733 39.0 35.0 41.0 33.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 1.0 11 3.0 12 3.0 13 8.0 14 14.0 15 12.0 16 21.0 17 46.0 18 81.0 19 182.0 20 336.0 21 556.0 22 895.0 23 1399.0 24 2028.0 25 2891.0 26 3726.0 27 4720.0 28 6273.0 29 7888.0 30 10541.0 31 13553.0 32 18373.0 33 24857.0 34 52997.0 35 136818.0 36 60585.0 37 82619.0 38 161967.0 39 702296.0 40 1249.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 25.989502975853146 13.800571962135457 47.53893590986161 12.670989152149792 2 24.682039787530485 13.855624667004385 50.07159164771821 11.390743897746926 3 23.963810171488404 13.008630321086805 46.867971431192984 16.159588076231802 4 21.062825622484944 14.685578889986346 49.51821172776823 14.733383759760482 5 21.834642955451258 16.81289559493546 46.71322244145638 14.639239008156899 6 22.266043352848513 19.04384092081432 45.91449559308495 12.775620133252218 7 84.7126194832602 2.3650302751324466 7.426023891640239 5.496326349967115 8 87.62378184324783 2.0747313481975636 7.053454325916639 3.248032482637965 9 79.3573174991268 4.718649065222034 8.344108705189681 7.579924730461494 10 36.34079937452725 31.960331210642906 13.947533384376598 17.751336030453242 11 28.17765523282128 22.881646708133534 31.742741948541912 17.19795611050327 12 28.473274379134256 25.347606942192346 27.852736327614487 18.326382351058918 13 19.681110676755036 32.705855865233445 32.81781178605933 14.795221671952188 14 14.05085358679167 39.35597587858797 27.88673946885705 18.70643106576331 15 12.594424255882505 26.51204104433593 39.090735955970175 21.802798743811387 16 15.434958776010282 25.24875880824002 36.75616200916157 22.560120406588126 17 15.550615719012228 24.559751846463097 29.78682883312168 30.102803601402993 18 18.282818235861516 24.70578801316022 33.64182895263386 23.36956479834441 19 19.096966009966547 30.98819605239722 29.467769879693652 20.447068057942587 20 24.5698525528186 23.087361857419666 28.298786604458652 24.043998985303087 21 18.489535745320325 29.625680159205636 29.990847680577115 21.893936414896924 22 24.935020074190074 23.212117146604427 25.59364781227182 26.25921496693368 23 20.821256820868214 28.84684630503054 23.788936873669464 26.542960000431787 24 19.521735409298355 22.541692400336487 36.25205194693042 21.684520243434733 25 23.198623836587533 28.458932918202013 26.577579978703703 21.76486326650675 26 18.372336709745024 31.778749810129852 26.412653177982925 23.4362603021422 27 16.543800440884265 31.8628709600066 25.330181296113384 26.263147302995748 28 18.017809627129726 25.845008901729376 32.54409035428806 23.593091116852836 29 18.232237599455335 21.803415580840735 31.412502823957023 28.551843995746907 30 16.153188392052364 32.54825400423613 29.104838392553546 22.193719211157966 31 19.012150918431782 29.53662431309414 30.84108042089875 20.61014434757533 32 26.835417856969375 25.47652588132518 24.47547648732901 23.212579774376437 33 20.826422830988967 27.88697078274306 27.868003044090738 23.418603342177235 34 19.523971443529728 25.31059672043172 29.904721810354996 25.26071002568355 35 19.438462410336953 25.959663484558643 32.933468729061275 21.66840537604313 36 21.377566716707573 26.07825040344997 30.24891687272879 22.295266007113675 37 24.740716409946806 27.8517339674418 27.00520224929623 20.402347373315166 38 16.609647793766708 25.56342279783398 36.60742718046107 21.219502227938243 39 19.83323810911693 30.477146573585962 27.20490323754625 22.48471207975086 40 24.173149238321926 25.67992789175127 30.96421651288149 19.18270635704532 41 20.008882453222547 25.693421201768164 31.068539075469236 23.22915726954005 42 18.949233541438726 28.586772392533494 25.63528431175252 26.82870975427526 43 19.70894544770417 23.334867715443824 30.098023114425583 26.85816372242642 44 24.20082980001372 24.752590522761672 26.420363640849725 24.626216036374878 45 16.975277942910193 29.22797448453628 27.715490088585508 26.081257483968017 46 18.446125839380265 28.301639475719366 28.27712020380295 24.975114481097414 47 19.9384859272487 26.697400571653716 31.657772647749816 21.706340853347765 48 18.5078866469433 22.188553201037212 36.29507632972715 23.008483822292337 49 18.864881077675975 22.539070842961774 30.068183623131077 28.52786445623117 50 18.089516931790932 24.373081540457957 34.76532049695476 22.77208103079636 51 20.046895035155856 23.615374354537877 31.436482363472763 24.901248246833504 52 19.294199650099195 21.567552521745434 32.353796130735525 26.784451697419847 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 526.0 1 413.5 2 301.0 3 229.0 4 157.0 5 172.5 6 188.0 7 382.5 8 577.0 9 642.5 10 708.0 11 933.0 12 1158.0 13 1204.5 14 1288.0 15 1325.0 16 1281.0 17 1237.0 18 2039.0 19 2841.0 20 2526.5 21 2212.0 22 2528.5 23 2845.0 24 5239.5 25 7634.0 26 9693.5 27 11753.0 28 13628.0 29 15503.0 30 19707.5 31 23912.0 32 30268.5 33 36625.0 34 44027.0 35 51429.0 36 56093.0 37 60757.0 38 63052.5 39 73073.0 40 80798.0 41 89254.5 42 97711.0 43 104654.5 44 111598.0 45 120438.5 46 129279.0 47 142781.0 48 156283.0 49 154443.5 50 152604.0 51 125521.0 52 98438.0 53 78766.5 54 59095.0 55 49719.5 56 40344.0 57 32953.5 58 25563.0 59 22336.5 60 19110.0 61 16454.0 62 13798.0 63 11327.5 64 8033.5 65 7210.0 66 5086.5 67 2963.0 68 2473.0 69 1983.0 70 1447.0 71 911.0 72 827.5 73 744.0 74 673.0 75 602.0 76 509.0 77 416.0 78 280.5 79 145.0 80 118.5 81 92.0 82 73.5 83 55.0 84 44.0 85 33.0 86 22.0 87 11.0 88 7.0 89 2.0 90 1.0 91 1.0 92 1.0 93 1.5 94 2.0 95 1.0 96 0.0 97 0.5 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 1296939.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 16.04162706602235 #Duplication Level Percentage of deduplicated Percentage of total 1 64.33104501001552 10.319746328181669 2 12.986890936265368 4.166617222933497 3 6.1044779966490195 2.9377727836494834 4 3.6325370560962975 2.33087219029614 5 2.3715364726466928 1.902165183383418 6 1.632290272388675 1.5710755087893096 7 1.163005893064212 1.3059554768485648 8 0.8638203457219192 1.108566707049082 9 0.6669725765458138 0.9629392802590789 >10 3.8095607088824313 11.84375548123224 >50 0.7857097509669992 9.22131736320403 >100 1.6290862724742672 46.35782008884621 >500 0.013455579831645864 1.4158178439849896 >1k 0.007688902760940495 2.730880274592631 >5k 0.0019222256902351237 1.8246982667496845 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTCTGCTT 7636 0.5887709445085698 TruSeq Adapter, Index 15 (95% over 23bp) TTCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTCTGC 5581 0.43032093259590465 TruSeq Adapter, Index 15 (95% over 21bp) TGCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTCTGC 5330 0.4109676708002458 TruSeq Adapter, Index 15 (95% over 21bp) GTCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTCTGC 5123 0.3950070126659774 TruSeq Adapter, Index 14 (95% over 21bp) GCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTCTGCT 4655 0.3589220464493704 TruSeq Adapter, Index 14 (95% over 22bp) ATCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTCTGC 4033 0.31096296741789703 TruSeq Adapter, Index 15 (95% over 21bp) GGCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTCTGC 3841 0.2961588787136481 TruSeq Adapter, Index 14 (95% over 21bp) GCCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTCTGC 3721 0.28690632327349247 TruSeq Adapter, Index 14 (95% over 21bp) AGCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTCTGC 2677 0.20640909094413848 TruSeq Adapter, Index 15 (95% over 21bp) TCCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTCTGC 2195 0.16924465992618004 TruSeq Adapter, Index 15 (95% over 21bp) ACCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTCTGC 2075 0.1599921044860244 TruSeq Adapter, Index 15 (95% over 21bp) CTCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTCTGC 2018 0.1555971406519505 TruSeq Adapter, Index 15 (95% over 21bp) CCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTCTGCT 1845 0.14225803989239277 TruSeq Adapter, Index 14 (95% over 22bp) TCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTCTGCT 1308 0.10085285429769633 TruSeq Adapter, Index 14 (95% over 22bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.6146780997410055 0.0 2 0.0 0.0 0.0 1.2856425784096246 0.0 3 0.0 0.0 0.0 4.6107025850868855 0.0 4 0.0 0.0 0.0 5.389382230004649 0.0 5 0.0 0.0 0.0 6.453426105622547 0.0 6 0.0 0.0 0.0 9.873170596304067 0.0 7 0.0 0.0 0.0 10.288610335567055 0.0 8 0.0 0.0 0.0 11.136067309256642 0.0 9 7.710462866796357E-5 0.0 0.0 11.680040464509124 0.0 10 7.710462866796357E-5 0.0 0.0 13.46508972280115 0.0 11 7.710462866796357E-5 0.0 0.0 15.070716510182823 0.0 12 7.710462866796357E-5 0.0 0.0 15.729961085293912 0.0 13 7.710462866796357E-5 0.0 0.0 16.03028361395563 0.0 14 7.710462866796357E-5 0.0 0.0 16.174700583450726 0.0 15 7.710462866796357E-5 0.0 0.0 16.423363010904907 0.0 16 7.710462866796357E-5 0.0 0.0 17.10072717375297 0.0 17 7.710462866796357E-5 0.0 0.0 18.089362722533597 0.0 18 7.710462866796357E-5 0.0 0.0 19.154408958324176 0.0 19 7.710462866796357E-5 0.0 0.0 19.774792800586614 0.0 20 7.710462866796357E-5 0.0 0.0 20.384690413350203 0.0 21 1.5420925733592713E-4 0.0 0.0 21.46477205173104 0.0 22 1.5420925733592713E-4 0.0 0.0 22.34268535374447 0.0 23 1.5420925733592713E-4 0.0 0.0 23.29006992618774 0.0 24 0.002621557374710761 0.0 0.0 24.02726728088214 0.0 25 0.002621557374710761 0.0 0.0 24.643333263939166 0.0 26 0.002621557374710761 0.0 0.0 25.180906735012208 0.0 27 0.002621557374710761 0.0 0.0 25.686096262044707 0.0 28 0.002621557374710761 0.0 0.0 26.15967289132334 0.0 29 0.002621557374710761 0.0 0.0 26.706421813207868 0.0 30 0.002621557374710761 0.0 0.0 27.383863080684595 0.0 31 0.002621557374710761 0.0 0.0 27.927682026679744 0.0 32 0.002621557374710761 0.0 0.0 28.436572575888302 0.0 33 0.002621557374710761 0.0 0.0 28.92125227169512 0.0 34 0.002698662003378725 0.0 0.0 29.37802009192414 0.0 35 0.002698662003378725 0.0 0.0 30.07689644617056 0.0 36 0.002698662003378725 0.0 0.0 30.58385937966242 0.0 37 0.0027757666320466882 0.0 0.0 31.07378219021866 0.0 38 0.0027757666320466882 0.0 0.0 31.564784465576253 0.0 39 0.0027757666320466882 0.0 0.0 32.03219272456145 0.0 40 0.0027757666320466882 0.0 0.0 32.547251644063444 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AATCCGT 55 1.8189894E-12 46.000004 43 CCGGGTA 35 1.0197073E-7 46.000004 5 AAATCGA 35 1.0197073E-7 46.000004 46 CTCAAGT 35 1.0197073E-7 46.000004 17 GGTAACC 35 1.0197073E-7 46.000004 8 CACGGGC 155 0.0 46.000004 4 ACCGAAA 35 1.0197073E-7 46.000004 24 CGCGACA 35 1.0197073E-7 46.000004 38 ACGGGTC 35 1.0197073E-7 46.000004 5 GCCGCGA 35 1.0197073E-7 46.000004 36 CTTATCG 70 0.0 46.000004 1 CGGATGA 35 1.0197073E-7 46.000004 6 TGCGACA 55 1.8189894E-12 46.000004 36 CATCGCG 35 1.0197073E-7 46.000004 1 CAATGAG 70 0.0 46.000004 17 CCGGTCA 35 1.0197073E-7 46.000004 34 TAGGCCA 35 1.0197073E-7 46.000004 19 CGACTTG 35 1.0197073E-7 46.000004 1 CGGTAAG 55 1.8189894E-12 46.000004 22 ATGCCCG 55 1.8189894E-12 46.000004 43 >>END_MODULE