SRR1545662_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545662_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1296732
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ACTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTGC	10459	0.8065660444872187	No Hit
ATCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTG	4504	0.3473346844220703	No Hit
ATGCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCT	3936	0.3035322641841182	No Hit
CTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTGCT	3836	0.29582057048025345	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3805	0.29342994543205536	No Hit
ATTGCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTC	3460	0.26682460215372183	No Hit
ATATCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTC	3298	0.25433165835346083	No Hit
ATGTCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTC	2916	0.22487298840469733	No Hit
ATGCCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTC	2850	0.2197832705601466	No Hit
CCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTGC	2470	0.19047883448546038	No Hit
ATTTCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTC	2170	0.16734375337386598	No Hit
ATGGCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTC	2143	0.1652615960738225	No Hit
ATAGCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTC	2091	0.16125151534781282	No Hit
ATTTTTTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTT	1822	0.14050705928441654	No Hit
ATACCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTC	1763	0.1359571599991363	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1535	0.11837449835432456	No Hit
ATCCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCT	1421	0.10958316753191871	No Hit
ATCTCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTC	1394	0.10750101023187522	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTAT	220	0.0	45.000004	8
ATCTCGC	50	2.1827873E-11	45.000004	1
GTCGCGG	25	3.8910828E-5	45.000004	3
GTACCGC	25	3.8910828E-5	45.000004	28
TACCCGG	25	3.8910828E-5	45.000004	27
CCGGCTA	50	2.1827873E-11	45.000004	42
CGTTGTG	25	3.8910828E-5	45.000004	3
CGCATAT	25	3.8910828E-5	45.000004	34
GGTCCCG	25	3.8910828E-5	45.000004	11
CCGTGAG	50	2.1827873E-11	45.000004	24
ATGTCGC	25	3.8910828E-5	45.000004	1
GACCCGT	25	3.8910828E-5	45.000004	32
TAGCCCG	50	2.1827873E-11	45.000004	2
CCGTCGG	25	3.8910828E-5	45.000004	42
CACCTAG	25	3.8910828E-5	45.000004	42
CGTTAAC	25	3.8910828E-5	45.000004	36
CCCGTAT	25	3.8910828E-5	45.000004	34
CCGTAGT	25	3.8910828E-5	45.000004	22
CGTAGCG	50	2.1827873E-11	45.000004	3
CTACGAT	25	3.8910828E-5	45.000004	36