##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545661_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1170764 Sequences flagged as poor quality 0 Sequence length 52 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.495625933151345 33.0 31.0 34.0 31.0 34.0 2 32.862089199872905 34.0 31.0 34.0 31.0 34.0 3 32.925343621771766 34.0 31.0 34.0 31.0 34.0 4 36.33047992592871 37.0 37.0 37.0 35.0 37.0 5 36.2950620278724 37.0 37.0 37.0 35.0 37.0 6 36.29843162242775 37.0 37.0 37.0 35.0 37.0 7 36.444531092517366 37.0 37.0 37.0 35.0 37.0 8 36.513422858919476 37.0 37.0 37.0 35.0 37.0 9 38.30622994899058 39.0 39.0 39.0 37.0 39.0 10 37.989271108438594 39.0 38.0 39.0 35.0 39.0 11 37.805690130547234 39.0 38.0 39.0 35.0 39.0 12 37.400429121496735 39.0 37.0 39.0 35.0 39.0 13 37.29312910202227 39.0 37.0 39.0 35.0 39.0 14 38.5836718587179 40.0 37.0 41.0 35.0 41.0 15 38.644772131702034 40.0 37.0 41.0 35.0 41.0 16 38.72501802241955 40.0 37.0 41.0 35.0 41.0 17 38.68070251562228 40.0 37.0 41.0 35.0 41.0 18 38.723894824234435 40.0 37.0 41.0 35.0 41.0 19 38.70196042925816 40.0 37.0 41.0 35.0 41.0 20 38.6145653607388 40.0 37.0 41.0 35.0 41.0 21 38.58909737573072 40.0 37.0 41.0 35.0 41.0 22 38.65100225152123 40.0 37.0 41.0 35.0 41.0 23 38.62215527638362 40.0 37.0 41.0 35.0 41.0 24 38.60761178170836 40.0 37.0 41.0 35.0 41.0 25 38.50438089999351 40.0 37.0 41.0 35.0 41.0 26 38.41260834805307 40.0 36.0 41.0 35.0 41.0 27 38.393465292749006 40.0 36.0 41.0 35.0 41.0 28 38.386191410053605 40.0 36.0 41.0 35.0 41.0 29 38.40594432353574 40.0 36.0 41.0 35.0 41.0 30 38.35205472665712 40.0 36.0 41.0 35.0 41.0 31 38.29145412739032 40.0 36.0 41.0 35.0 41.0 32 38.22229586833897 40.0 36.0 41.0 34.0 41.0 33 38.182359553248986 40.0 36.0 41.0 34.0 41.0 34 38.13683799638527 40.0 36.0 41.0 34.0 41.0 35 38.07510736578849 40.0 35.0 41.0 34.0 41.0 36 37.98544881803677 40.0 35.0 41.0 34.0 41.0 37 37.90485529107489 40.0 35.0 41.0 34.0 41.0 38 37.80648277535011 40.0 35.0 41.0 34.0 41.0 39 37.799808501115514 40.0 35.0 41.0 34.0 41.0 40 37.69274678756778 40.0 35.0 41.0 33.0 41.0 41 37.59787113372123 40.0 35.0 41.0 33.0 41.0 42 37.58529473062035 40.0 35.0 41.0 33.0 41.0 43 37.51342969206433 40.0 35.0 41.0 33.0 41.0 44 37.42929317949647 40.0 35.0 41.0 33.0 41.0 45 37.28915050343195 39.0 35.0 41.0 33.0 41.0 46 37.33907260558063 39.0 35.0 41.0 33.0 41.0 47 37.348975540758 39.0 35.0 41.0 33.0 41.0 48 37.27873166581822 39.0 35.0 41.0 33.0 41.0 49 37.29855632732131 39.0 35.0 41.0 33.0 41.0 50 37.2021090501587 39.0 35.0 41.0 33.0 41.0 51 37.07806270093717 39.0 35.0 41.0 33.0 41.0 52 36.708403230710886 38.0 35.0 40.0 31.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 1.0 10 4.0 11 0.0 12 1.0 13 1.0 14 2.0 15 7.0 16 23.0 17 39.0 18 92.0 19 183.0 20 352.0 21 592.0 22 1022.0 23 1509.0 24 2275.0 25 3177.0 26 4276.0 27 5522.0 28 7043.0 29 9133.0 30 11572.0 31 15475.0 32 19862.0 33 27457.0 34 58230.0 35 146081.0 36 61464.0 37 81081.0 38 148375.0 39 564917.0 40 995.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 25.807421478624214 14.16459679320512 47.32960699167381 12.69837473649685 2 23.496024817982104 14.267350208923405 50.566894779818995 11.669730193275502 3 23.660105708750866 13.05839605590879 46.66192332528161 16.61957491005873 4 20.02965584865951 14.580564486096259 50.803663248955374 14.58611641628885 5 22.809208346003125 16.993433347796824 46.30753935037292 13.889818955827135 6 20.82341103757888 18.134397709529846 47.00118896720432 14.041002285686954 7 83.05986518205206 2.258525202346502 8.316535185571132 6.3650744300303055 8 86.10035839844751 1.6853951778496776 8.42099688750252 3.793249536200293 9 77.27526640723494 3.7185120143769366 10.691565507651415 8.314656070736715 10 37.75321072393753 29.534987409930608 14.399742390439062 18.312059475692795 11 30.914941012877062 20.900710988721894 33.3792292895921 14.805118708808948 12 29.085195650019983 26.30188492300754 25.994478818959244 18.618440608013227 13 20.034780707298825 32.21238439173053 34.30537666002713 13.447458240943522 14 14.9463085643221 39.94255033465327 28.58424071802686 16.52690038299777 15 12.856818282762367 27.52459078003765 39.81733295523265 19.80125798196733 16 15.852554400374455 26.727931504556 37.85519541085991 19.564318684209628 17 15.53395902163032 24.20368238176097 27.657837104659865 32.604521491948844 18 17.580400490619798 25.39717654454698 33.855926557359126 23.166496407474092 19 20.449894257083407 28.645653607387995 30.27834815556338 20.62610397996522 20 22.320723903365668 24.104430952779552 27.949441561236938 25.625403582617846 21 18.183938009709898 30.25451756289056 31.31023844258963 20.25130598480992 22 25.649575832533284 22.21344352918265 26.43641246228958 25.70056817599448 23 20.510367589027336 28.906679740750484 22.269646145593818 28.313306524628363 24 20.146417211325254 22.271696089049545 34.36644789214564 23.21543880747956 25 24.072315171973173 25.890187945649167 27.778442111305097 22.259054771072563 26 17.04792767799488 31.67692207823268 25.73806505837214 25.537085185400304 27 16.216761021008505 28.565962055546635 24.905104700862 30.312172222582863 28 17.081410087771744 25.972783584052806 31.719287576317683 25.226518751857764 29 15.343228865937114 22.17671537560089 33.53263339152895 28.947422366933047 30 17.504381754136613 32.10459153168358 25.05662968796444 25.33439702621536 31 19.956114127185327 27.245115155573625 22.030144418516457 30.768626298724595 32 24.898869456184165 25.586112999716427 26.69820732444797 22.81681021965144 33 20.583823896190864 30.150226689580478 21.503821436258715 27.762127977969943 34 15.401566840114661 27.83071566942612 24.2504040096894 32.51731348076982 35 19.287832560618536 24.192749349997094 28.710055997622064 27.809362091762303 36 21.302926977597533 24.47564154688733 24.590780037650628 29.630651437864508 37 20.66812782080761 32.979746558657425 27.16585067528554 19.186274945249426 38 16.259553590646792 26.71588808675361 32.144480014759594 24.88007830784001 39 20.039649323006174 29.576584179219722 25.37548130964054 25.008285188133563 40 24.778264449538934 23.382338370499948 26.90952232900909 24.92987485095203 41 18.803106347649912 24.87461179195807 28.136755144503933 28.185526715888088 42 18.455299274661673 26.215958126488342 24.850439542042633 30.47830305680735 43 18.291303798203568 22.961245818969495 29.355959014797172 29.391491368029765 44 25.086353868072468 24.384333648796854 24.237506448780454 26.291806034350216 45 16.76930619663741 27.943291730869756 26.54770730907339 28.739694763419443 46 18.832403456204666 26.69880522462255 24.481535134322545 29.987256184850235 47 19.548175379495785 24.646726411129826 30.4694199684992 25.335678240875186 48 17.486700991830975 21.745202278170495 35.708648369782466 25.059448360216063 49 18.29779528581337 21.17275556815891 27.86274603592184 32.66670311010588 50 17.31399325568603 23.986644618385945 31.939656497808265 26.759705628119757 51 20.797872158692957 24.062919597801095 26.637819406814696 28.501388836691255 52 18.29121838389291 21.551482621604354 29.9745294525626 30.182769541940136 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 495.0 1 369.0 2 243.0 3 214.5 4 186.0 5 269.0 6 352.0 7 458.0 8 564.0 9 955.5 10 1347.0 11 1487.5 12 1628.0 13 1675.5 14 1861.5 15 2000.0 16 2318.5 17 2637.0 18 2274.5 19 1912.0 20 2214.0 21 2516.0 22 3092.0 23 3668.0 24 4330.0 25 4992.0 26 6138.0 27 7284.0 28 7990.0 29 8696.0 30 11876.5 31 15057.0 32 18124.5 33 21192.0 34 23880.0 35 26568.0 36 29874.0 37 33180.0 38 35985.5 39 51400.5 40 64010.0 41 74964.0 42 85918.0 43 87724.0 44 89530.0 45 95608.5 46 101687.0 47 114129.5 48 126572.0 49 145451.5 50 164331.0 51 158829.0 52 153327.0 53 121388.0 54 89449.0 55 67242.0 56 45035.0 57 37025.0 58 29015.0 59 24199.0 60 19383.0 61 15242.5 62 11102.0 63 9384.5 64 5721.5 65 3776.0 66 3063.0 67 2350.0 68 1675.5 69 1001.0 70 880.0 71 759.0 72 583.5 73 408.0 74 307.5 75 207.0 76 154.0 77 101.0 78 79.5 79 58.0 80 40.0 81 22.0 82 18.0 83 14.0 84 9.0 85 4.0 86 3.0 87 2.0 88 2.0 89 2.0 90 2.0 91 1.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 1170764.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 17.242488621300364 #Duplication Level Percentage of deduplicated Percentage of total 1 62.13763832356092 10.714075217484766 2 12.937231463540291 4.4614013260244505 3 6.520557038371659 3.3729189161599 4 3.9799341893260407 2.744958798919142 5 2.7259236269098484 2.3500853559763444 6 1.9490245854057004 2.016362054189547 7 1.319140002393345 1.5921679536818574 8 1.0371461777329904 1.4306384934549004 9 0.8323580138651837 1.291673122462674 >10 4.574656417204018 14.845925722813167 >50 0.804557331231402 9.999348909127697 >100 1.1531163226384802 36.97710224189497 >500 0.01881426374420878 2.1968175997900987 >1k 0.006931570853129551 2.614958220929177 >5k 0.0029706732227698074 3.391566067091324 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTGCTT 8548 0.7301215274812003 Illumina Single End Adapter 2 (95% over 21bp) TGCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTGC 6809 0.5815860412516954 No Hit GCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTGCT 6478 0.5533139044248029 No Hit TTCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTGC 6249 0.5337540272847474 No Hit GTCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTGC 6248 0.5336686129740922 No Hit ATCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTGC 5396 0.4608956202958069 No Hit GCCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTGC 4755 0.4061450471657823 No Hit GGCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTGC 3786 0.3233785801408311 No Hit AGCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTGC 3239 0.27665695221240144 No Hit CTCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTGC 2733 0.23343731102083765 No Hit ACCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTGC 2438 0.20824008937753466 No Hit CCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTGCT 2334 0.19935700106938717 No Hit TCCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTGC 2197 0.18765524050961593 No Hit TCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTGCT 1650 0.1409336125811863 No Hit TTTTTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTAAT 1557 0.1329900816902467 No Hit TACTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTGC 1328 0.11343020455019115 No Hit GACTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTGC 1274 0.10881783177480688 No Hit CGCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTGC 1253 0.10702413125104632 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.7556604063671244 0.0 2 0.0 0.0 0.0 1.7409144797755995 0.0 3 0.0 0.0 0.0 6.10165669596947 0.0 4 0.0 0.0 0.0 7.096220929239369 0.0 5 0.0 0.0 0.0 8.606175113003133 0.0 6 0.0 0.0 0.0 13.15781831351152 0.0 7 0.0 0.0 0.0 13.667485505191483 0.0 8 0.0 0.0 0.0 14.772917513691914 0.0 9 0.0 0.0 0.0 15.459306914117619 0.0 10 0.0 0.0 0.0 17.943582139525986 0.0 11 0.0 0.0 0.0 20.0579279854864 0.0 12 0.0 0.0 0.0 20.910619048757905 0.0 13 0.0 0.0 0.0 21.31744741040893 0.0 14 0.0 0.0 0.0 21.51133789559638 0.0 15 0.0 0.0 0.0 21.829762445719204 0.0 16 0.0 0.0 0.0 22.650166899563022 0.0 17 8.541431065526443E-5 0.0 0.0 23.984082189066285 0.0 18 8.541431065526443E-5 0.0 0.0 25.36036297665456 0.0 19 8.541431065526443E-5 0.0 0.0 26.172994728228748 0.0 20 8.541431065526443E-5 0.0 0.0 27.030127335654324 0.0 21 8.541431065526443E-5 0.0 0.0 28.331328944176622 0.0 22 1.7082862131052886E-4 0.0 0.0 29.419678090546004 0.0 23 1.7082862131052886E-4 0.0 0.0 30.593697790502613 0.0 24 2.562429319657933E-4 0.0 0.0 31.493793796187788 0.0 25 2.562429319657933E-4 0.0 0.0 32.25970391983355 0.0 26 2.562429319657933E-4 0.0 0.0 32.96351783963292 0.0 27 2.562429319657933E-4 0.0 0.0 33.58072164842786 0.0 28 2.562429319657933E-4 0.0 0.0 34.21389793331534 0.0 29 2.562429319657933E-4 0.0 0.0 34.86595078085763 0.0 30 2.562429319657933E-4 0.0 0.0 35.65919348391307 0.0 31 2.562429319657933E-4 0.0 0.0 36.36719270493455 0.0 32 2.562429319657933E-4 0.0 0.0 37.04709061775046 0.0 33 2.562429319657933E-4 0.0 0.0 37.66053619687657 0.0 34 2.562429319657933E-4 0.0 0.0 38.260657143540456 0.0 35 2.562429319657933E-4 0.0 0.0 39.02272362320673 0.0 36 2.562429319657933E-4 0.0 0.0 39.69595921979152 0.0 37 2.562429319657933E-4 0.0 0.0 40.32939174761096 0.0 38 2.562429319657933E-4 0.0 0.0 40.986911111035184 0.0 39 2.562429319657933E-4 0.0 0.0 41.587544543563006 0.0 40 2.562429319657933E-4 0.0 0.0 42.21363144066609 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACAACGA 55 1.8189894E-12 46.000004 27 AGCGTAT 35 1.0195981E-7 46.000004 18 CGTATAG 35 1.0195981E-7 46.000004 20 CGCGGCC 35 1.0195981E-7 46.000004 12 CGGCCGC 35 1.0195981E-7 46.000004 21 TAGGTTA 55 1.8189894E-12 46.000004 17 GTCCTCG 35 1.0195981E-7 46.000004 40 TAGCGCG 55 1.8189894E-12 46.000004 1 TAGCGAA 35 1.0195981E-7 46.000004 16 GGCCGGT 55 1.8189894E-12 46.000004 9 TGGCGAC 55 1.8189894E-12 46.000004 29 GGCCGAC 55 1.8189894E-12 46.000004 15 ATTCGAT 35 1.0195981E-7 46.000004 29 CGATTAG 55 1.8189894E-12 46.000004 1 CCGCTGC 35 1.0195981E-7 46.000004 40 ACGATCA 35 1.0195981E-7 46.000004 39 TGCGCTA 35 1.0195981E-7 46.000004 27 CGCTCCA 35 1.0195981E-7 46.000004 21 ACCGTAA 35 1.0195981E-7 46.000004 19 AGTAGCG 55 1.8189894E-12 46.000004 1 >>END_MODULE