SRR1545660_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545660_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2344742
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ACTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTCTGC	7753	0.3306547159559559	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5047	0.21524756241838122	No Hit
ATGCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTCT	3693	0.15750133703409586	No Hit
ATCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTCTG	3476	0.14824658747103092	No Hit
ATGCCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTC	3001	0.12798849510948326	No Hit
ATGTCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTC	2894	0.12342509325119778	No Hit
ATTGCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTC	2654	0.11318942553167896	No Hit
CTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTCTGCT	2573	0.10973488767634136	Illumina Single End Adapter 1 (95% over 21bp)
ATATCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTC	2562	0.10926575290586343	No Hit
ATGGCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTC	2391	0.10197283965570625	No Hit
ATGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAA	2360	0.10065073257526842	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTACGA	35	1.2126475E-7	45.000004	1
TTCACGA	35	1.2126475E-7	45.000004	2
TAAGTCG	35	1.2126475E-7	45.000004	36
CCGTACT	35	1.2126475E-7	45.000004	44
GAACGTA	20	7.034789E-4	45.000004	18
TCCGTTA	30	2.166471E-6	45.000004	38
CGCACCA	20	7.034789E-4	45.000004	32
TATACGA	20	7.034789E-4	45.000004	40
ACGACTA	20	7.034789E-4	45.000004	21
ACACGTA	75	0.0	45.0	1
CGACGAA	25	3.892051E-5	45.0	43
ATTCGGT	55	1.8189894E-12	45.0	1
TCGATGT	85	0.0	45.0	2
ATCGTAC	110	0.0	45.0	1
TAACACG	25	3.892051E-5	45.0	35
CGTACGA	25	3.892051E-5	45.0	19
CGTAAAC	25	3.892051E-5	45.0	34
TCGGACA	135	0.0	43.333332	2
GTCGATA	85	0.0	42.35294	11
ATAGCCG	80	0.0	42.187504	1