##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545660_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2344742 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.893654397797285 31.0 31.0 34.0 31.0 34.0 2 32.571763119353854 34.0 31.0 34.0 31.0 34.0 3 32.55190421803337 34.0 31.0 34.0 31.0 34.0 4 36.019743750058645 37.0 35.0 37.0 35.0 37.0 5 35.79671835963189 37.0 35.0 37.0 35.0 37.0 6 35.80284440676202 37.0 35.0 37.0 35.0 37.0 7 35.77523156065784 37.0 35.0 37.0 35.0 37.0 8 35.74059448758115 37.0 35.0 37.0 33.0 37.0 9 37.92369565606792 39.0 38.0 39.0 35.0 39.0 10 37.87344321891278 39.0 38.0 39.0 35.0 39.0 11 37.687621068757245 39.0 38.0 39.0 35.0 39.0 12 37.22275798360758 39.0 37.0 39.0 33.0 39.0 13 36.97767771464835 39.0 37.0 39.0 33.0 39.0 14 37.65928021078652 40.0 36.0 41.0 33.0 41.0 15 37.54588479244198 40.0 36.0 41.0 32.0 41.0 16 37.40981694361256 40.0 36.0 41.0 32.0 41.0 17 37.55141759733054 40.0 35.0 41.0 32.0 41.0 18 37.62862609191118 40.0 35.0 41.0 33.0 41.0 19 37.627803400118225 40.0 35.0 41.0 33.0 41.0 20 37.61141524312696 40.0 35.0 41.0 33.0 41.0 21 37.57726308480848 39.0 35.0 41.0 33.0 41.0 22 37.49535130091072 39.0 35.0 41.0 32.0 41.0 23 37.439284578004745 39.0 35.0 41.0 32.0 41.0 24 37.42842069617894 39.0 35.0 41.0 32.0 41.0 25 37.40545996105328 39.0 35.0 41.0 32.0 41.0 26 37.29221978366916 39.0 35.0 41.0 32.0 41.0 27 37.19549485615048 39.0 35.0 41.0 32.0 41.0 28 37.12241986538391 39.0 35.0 41.0 32.0 41.0 29 37.08194974116555 39.0 35.0 41.0 32.0 41.0 30 37.016676888118184 39.0 35.0 41.0 31.0 41.0 31 36.903129640702474 39.0 35.0 41.0 31.0 41.0 32 36.78230312759357 39.0 35.0 41.0 31.0 41.0 33 36.66445050244334 39.0 35.0 41.0 31.0 41.0 34 36.60693287363812 39.0 35.0 41.0 31.0 41.0 35 36.51062121120362 39.0 35.0 41.0 30.0 41.0 36 36.36762594775886 38.0 35.0 41.0 30.0 41.0 37 36.28610866355446 38.0 35.0 41.0 30.0 41.0 38 36.19144025227509 38.0 35.0 41.0 30.0 41.0 39 36.08936505594219 38.0 35.0 40.0 30.0 41.0 40 35.99686234135781 38.0 35.0 40.0 30.0 41.0 41 35.924105935749004 38.0 35.0 40.0 30.0 41.0 42 35.77505371593122 38.0 35.0 40.0 29.0 41.0 43 35.65977450824014 38.0 35.0 40.0 29.0 41.0 44 35.610185257056 38.0 34.0 40.0 29.0 41.0 45 35.59227411800531 37.0 34.0 40.0 29.0 41.0 46 35.54080150396078 37.0 34.0 40.0 29.0 41.0 47 35.471846369451306 37.0 34.0 40.0 29.0 41.0 48 35.42808590454728 37.0 34.0 40.0 29.0 41.0 49 35.38251116753997 37.0 34.0 40.0 29.0 41.0 50 35.25162384603509 36.0 34.0 40.0 28.0 41.0 51 35.08224529607095 36.0 34.0 40.0 28.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 2.0 9 8.0 10 18.0 11 25.0 12 30.0 13 22.0 14 56.0 15 69.0 16 126.0 17 297.0 18 674.0 19 1313.0 20 2274.0 21 3687.0 22 5682.0 23 7999.0 24 11572.0 25 16316.0 26 21957.0 27 26876.0 28 31793.0 29 38339.0 30 47240.0 31 59090.0 32 73243.0 33 95524.0 34 158459.0 35 261144.0 36 177290.0 37 244743.0 38 365046.0 39 693533.0 40 294.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 1.9536904273476567 91.61187030385433 3.3734201886604156 3.061019080137602 2 3.246924395093362 2.638072760243984 91.29251747100534 2.822485373657315 3 28.129619378166126 16.06829237502463 42.73020229944275 13.071885947366491 4 27.212887388036723 15.642787138201134 43.965263555649194 13.179061918112952 5 24.903933993590766 14.140660251746247 46.24086573277572 14.71454002188727 6 23.29906659240121 14.485303713585546 47.01898972253664 15.196639971476605 7 23.120667433773097 17.333378256541657 44.37797420782329 15.167980101861952 8 26.61909071445814 19.152640247839635 42.68068725684958 11.547581780852648 9 83.21132986059874 3.898509942671731 8.683087520929808 4.207072675799726 10 84.07833356505748 3.9358274812324767 8.324796502131152 3.6610424515788944 11 77.52784741348941 6.379763743729587 9.803978433448115 6.288410409332881 12 44.47713223885613 20.7147310876847 16.473582168102077 18.334554505357094 13 35.79105931484146 23.810807329761655 22.213659327977236 18.184474027419647 14 29.90934610289746 23.034261338774158 26.789642527834616 20.26675003049376 15 24.4544175862419 24.92346705948885 31.499414434509216 19.122700919760042 16 19.901635233215423 29.68237017121713 31.315215064173373 19.10077953139407 17 20.493598016327596 23.239657071012505 36.882735925743646 19.384008986916257 18 25.069112081414502 20.493171530172617 33.18893933746229 21.248777050950597 19 24.905469343748692 20.497095202798434 28.2237875211857 26.373647932267176 20 25.470648796328128 22.105374493227824 30.164128931882484 22.259847778561564 21 27.05760377900852 23.700560658699338 27.275197015279296 21.96663854701285 22 27.295071270101356 24.203217240958708 26.03979457014887 22.461916918791065 23 27.0793545729125 23.50484616217904 28.137296128955764 21.278503135952697 24 27.975274038678883 21.06722189477563 26.915413294938205 24.04209077160728 25 27.476413183198833 23.299706321633682 25.19377398451514 24.030106510652345 26 26.91426178231976 22.769541382378105 28.48206753664156 21.834129298660578 27 28.203273537131164 23.077379089042633 25.54536917068061 23.17397820314559 28 23.069659689637493 26.188851481314362 25.44877005657765 25.29271877247049 29 22.392314378298337 24.751422544569934 28.303369837704956 24.55289323942677 30 22.921370453550967 25.363686068659153 27.914329167132244 23.800614310657632 31 22.536637293143553 25.356904938794973 26.87340440867268 25.233053359388798 32 24.361870090611248 25.226656067064095 28.229587732893428 22.18188610943123 33 25.755029764468755 26.332961153082085 25.290628990311088 22.621380092138068 34 27.296436025797295 24.32741000928887 24.398803791632513 23.977350173281327 35 27.47116740349258 24.946838500781748 24.322420121275602 23.259573974450067 36 23.154317191401017 24.71261230446676 28.227114113194546 23.90595639093768 37 24.10704461301073 25.591472324033944 27.08170024676489 23.21978281619044 38 28.041379392700776 25.99680476572689 23.1567481624844 22.805067679087934 39 24.466060658272852 26.977381733256795 25.632329697681023 22.924227910789334 40 25.558121106714516 26.61729947260722 25.547800141764 22.27677927891427 41 24.092160246201928 25.788679522096675 24.210168965284883 25.90899126641652 42 26.976272869253847 22.767835437758187 26.759532605293035 23.496359087694938 43 22.83001711915426 23.58587853162523 27.16601655960443 26.418087789616084 44 21.934268247849868 25.145879589310894 27.064981989489674 25.854870173349564 45 22.20316776856473 23.60370565290339 27.58175526347888 26.611371315053 46 24.36357603523117 23.903525419854297 27.22947769946544 24.503420845449096 47 21.450163813332125 25.522125675234204 26.93243009252191 26.09528041891176 48 22.593615843448873 24.86090154055329 26.525093165900554 26.02038945009728 49 22.41316955127686 25.018914660973362 29.225049067232128 23.34286672051765 50 22.77640780947328 24.59353736999636 29.724677597791143 22.90537722273922 51 22.565083919680713 24.5032502509871 26.599685594406548 26.331980234925634 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 645.0 1 1189.0 2 1733.0 3 5125.5 4 8518.0 5 5879.0 6 3240.0 7 3243.5 8 3247.0 9 3359.0 10 3471.0 11 3802.0 12 4133.0 13 4148.5 14 4164.0 15 4255.5 16 4347.0 17 4641.5 18 4936.0 19 5439.5 20 5943.0 21 6334.5 22 6726.0 23 7503.0 24 8280.0 25 9609.0 26 14778.5 27 18619.0 28 23944.0 29 29269.0 30 32251.0 31 35233.0 32 38500.0 33 41767.0 34 49778.0 35 57789.0 36 67958.5 37 78128.0 38 89598.5 39 101069.0 40 119913.0 41 138757.0 42 157171.5 43 175586.0 44 194568.5 45 213551.0 46 214601.0 47 215651.0 48 195315.5 49 174980.0 50 166405.0 51 157830.0 52 151518.5 53 145207.0 54 144626.5 55 144046.0 56 141207.0 57 138368.0 58 126475.0 59 114582.0 60 103724.0 61 92866.0 62 82964.5 63 73063.0 64 60884.5 65 48706.0 66 40150.0 67 31594.0 68 25988.5 69 20383.0 70 16477.5 71 12572.0 72 9859.0 73 7146.0 74 5152.5 75 2651.5 76 2144.0 77 1814.5 78 1485.0 79 925.0 80 365.0 81 346.5 82 328.0 83 230.5 84 133.0 85 79.0 86 25.0 87 18.0 88 11.0 89 10.0 90 9.0 91 4.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2344742.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 15.725570329056765 #Duplication Level Percentage of deduplicated Percentage of total 1 72.43262084217207 11.390442731714797 2 10.801726431360969 3.3972661734319654 3 4.45018605375386 2.0994514129708177 4 2.41262662021925 1.5175971837604938 5 1.5498880439786782 1.2186436718875464 6 0.9832102111001576 0.9276924793741368 7 0.6812085174581523 0.7498674715028467 8 0.49764232183026325 0.6260567464525526 9 0.39164119865284724 0.5542903091854297 >10 2.943552012835375 10.051238291099969 >50 0.9910201221676271 11.57550773903249 >100 1.8494313188885367 52.68870863689536 >500 0.010345707359385049 1.1047653170100153 >1k 0.004356087309214758 1.550456176957088 >5k 5.445109136518447E-4 0.5480156587245465 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source ACTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTCTGC 7753 0.3306547159559559 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5047 0.21524756241838122 No Hit ATGCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTCT 3693 0.15750133703409586 No Hit ATCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTCTG 3476 0.14824658747103092 No Hit ATGCCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTC 3001 0.12798849510948326 No Hit ATGTCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTC 2894 0.12342509325119778 No Hit ATTGCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTC 2654 0.11318942553167896 No Hit CTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTCTGCT 2573 0.10973488767634136 Illumina Single End Adapter 1 (95% over 21bp) ATATCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTC 2562 0.10926575290586343 No Hit ATGGCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTC 2391 0.10197283965570625 No Hit ATGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAA 2360 0.10065073257526842 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.1172836926194865 0.0 2 4.264861549799509E-5 0.0 0.0 0.5637720482679971 0.0 3 4.264861549799509E-5 0.0 0.0 0.7831138777741858 0.0 4 4.264861549799509E-5 0.0 0.0 1.075640731474934 0.0 5 4.264861549799509E-5 0.0 0.0 2.180751656258983 0.0 6 4.264861549799509E-5 0.0 0.0 2.4370271867864353 0.0 7 4.264861549799509E-5 0.0 0.0 2.8498657848070277 0.0 8 4.264861549799509E-5 0.0 0.0 4.126040306353535 0.0 9 4.264861549799509E-5 0.0 0.0 4.285503479700538 0.0 10 4.264861549799509E-5 0.0 0.0 4.599738478689766 0.0 11 4.264861549799509E-5 0.0 0.0 4.83068073161141 0.0 12 4.264861549799509E-5 0.0 0.0 5.52350749037634 0.0 13 8.529723099599018E-5 0.0 0.0 6.122549943661179 0.0 14 1.2794584649398525E-4 0.0 0.0 6.369144238470587 0.0 15 1.2794584649398525E-4 0.0 0.0 6.511761208695882 0.0 16 1.2794584649398525E-4 0.0 0.0 6.61859599051836 0.0 17 2.1324307748997543E-4 0.0 0.0 6.757587828426326 0.0 18 2.1324307748997543E-4 0.0 0.0 7.051394140592014 0.0 19 2.1324307748997543E-4 0.0 0.0 7.417532504642302 0.0 20 2.558916929879705E-4 0.0 0.0 7.840180284227433 0.0 21 2.9854030848596564E-4 0.0 0.0 8.109463642481774 0.0 22 2.9854030848596564E-4 0.0 0.0 8.409539301125667 0.0 23 2.9854030848596564E-4 0.0 0.0 8.866433918955689 0.0 24 3.411889239839607E-4 0.0 0.0 9.244556543960913 0.0 25 3.838375394819558E-4 0.0 0.0 9.651125795503301 0.0 26 3.838375394819558E-4 0.0 0.0 9.968985926809857 0.0 27 3.838375394819558E-4 0.0 0.0 10.25822883711726 0.0 28 4.2648615497995087E-4 0.0 0.0 10.5275548439871 0.0 29 4.2648615497995087E-4 0.0 0.0 10.814110891518128 0.0 30 4.2648615497995087E-4 0.0 0.0 11.09384316056948 0.0 31 5.11783385975941E-4 0.0 0.0 11.424839065449419 0.0 32 5.11783385975941E-4 0.0 0.0 11.798057099672373 0.0 33 5.11783385975941E-4 0.0 0.0 12.122996901151598 0.0 34 5.544320014739362E-4 0.0 0.0 12.433564119207999 0.0 35 5.970806169719313E-4 0.0 0.0 12.757565651146267 0.0 36 5.970806169719313E-4 0.0 0.0 13.11125061947114 0.0 37 6.823778479679214E-4 0.0 0.0 13.493638106026165 0.0 38 7.250264634659165E-4 0.0 0.0 13.826169361064032 0.0 39 8.103236944619067E-4 0.0 0.0 14.176954223535041 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATTACGA 35 1.2126475E-7 45.000004 1 TTCACGA 35 1.2126475E-7 45.000004 2 TAAGTCG 35 1.2126475E-7 45.000004 36 CCGTACT 35 1.2126475E-7 45.000004 44 GAACGTA 20 7.034789E-4 45.000004 18 TCCGTTA 30 2.166471E-6 45.000004 38 CGCACCA 20 7.034789E-4 45.000004 32 TATACGA 20 7.034789E-4 45.000004 40 ACGACTA 20 7.034789E-4 45.000004 21 ACACGTA 75 0.0 45.0 1 CGACGAA 25 3.892051E-5 45.0 43 ATTCGGT 55 1.8189894E-12 45.0 1 TCGATGT 85 0.0 45.0 2 ATCGTAC 110 0.0 45.0 1 TAACACG 25 3.892051E-5 45.0 35 CGTACGA 25 3.892051E-5 45.0 19 CGTAAAC 25 3.892051E-5 45.0 34 TCGGACA 135 0.0 43.333332 2 GTCGATA 85 0.0 42.35294 11 ATAGCCG 80 0.0 42.187504 1 >>END_MODULE