SRR1545658_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545658_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	3368596
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ACTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTCTGC	9448	0.2804729329370456	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7017	0.2083063685879815	No Hit
ATGCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTCT	5097	0.15130932887173174	No Hit
ATGCCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTC	4781	0.14192856608509896	No Hit
ATCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTCTG	4036	0.11981252723686664	No Hit
ATGTCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTC	3521	0.10452425877131007	No Hit
ATTGCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTC	3432	0.10188220849279642	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTACGAT	35	1.2128658E-7	45.0	34
CGTAAGT	20	7.0352294E-4	45.0	28
ACGTATA	25	3.892416E-5	45.0	13
TACGCAT	115	0.0	41.08696	2
ATCGGTT	365	0.0	40.068493	1
GCGATAC	90	0.0	40.0	11
ACTACCG	40	3.460882E-7	39.375	12
ATCGATT	355	0.0	38.66197	1
TACGCTA	105	0.0	38.57143	2
AACCGTA	35	6.251883E-6	38.571426	40
CCCGTAT	35	6.251883E-6	38.571426	20
CGAACCC	250	0.0	37.800003	19
TAATACG	30	1.1403901E-4	37.499996	12
CGCGATA	30	1.1403901E-4	37.499996	16
CGAATCG	30	1.1403901E-4	37.499996	45
ATCCGAT	115	0.0	37.173916	1
CGCAATA	55	2.752131E-9	36.81818	22
ATCGCGC	165	0.0	36.81818	1
CGTTTTT	4405	0.0	36.010216	1
CGCATTA	25	0.0021076852	36.0	42