##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545658_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3368596 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.786896083709653 31.0 31.0 34.0 31.0 34.0 2 32.43449021491446 33.0 31.0 34.0 31.0 34.0 3 32.44423997416134 34.0 31.0 34.0 31.0 34.0 4 35.951282967740866 37.0 35.0 37.0 35.0 37.0 5 35.733831839733824 37.0 35.0 37.0 35.0 37.0 6 35.743603863449344 37.0 35.0 37.0 35.0 37.0 7 35.72629427809093 37.0 35.0 37.0 33.0 37.0 8 35.680505765606796 37.0 35.0 37.0 33.0 37.0 9 37.79743459886552 39.0 37.0 39.0 35.0 39.0 10 37.66880267031131 39.0 38.0 39.0 35.0 39.0 11 37.51383068791865 39.0 37.0 39.0 35.0 39.0 12 37.14510466675137 39.0 37.0 39.0 33.0 39.0 13 36.962788057695256 39.0 37.0 39.0 33.0 39.0 14 37.853766673118415 40.0 36.0 41.0 33.0 41.0 15 37.830260440848356 40.0 36.0 41.0 33.0 41.0 16 37.73429108150695 40.0 36.0 41.0 32.0 41.0 17 37.801716798333786 40.0 36.0 41.0 33.0 41.0 18 37.849241048793026 40.0 36.0 41.0 33.0 41.0 19 37.840245312884065 40.0 36.0 41.0 33.0 41.0 20 37.76651103308322 40.0 36.0 41.0 33.0 41.0 21 37.74762245160892 40.0 36.0 41.0 33.0 41.0 22 37.67583378950756 40.0 36.0 41.0 32.0 41.0 23 37.608797255592535 40.0 36.0 41.0 32.0 41.0 24 37.60243792963003 40.0 35.0 41.0 32.0 41.0 25 37.55232476675743 40.0 35.0 41.0 32.0 41.0 26 37.4469695980165 40.0 35.0 41.0 32.0 41.0 27 37.349514456467915 40.0 35.0 41.0 32.0 41.0 28 37.27620795132453 39.0 35.0 41.0 32.0 41.0 29 37.22234396763518 39.0 35.0 41.0 31.0 41.0 30 37.13650642582251 39.0 35.0 41.0 31.0 41.0 31 37.04200563083255 39.0 35.0 41.0 31.0 41.0 32 36.93199184467357 39.0 35.0 41.0 31.0 41.0 33 36.82544537843066 39.0 35.0 41.0 31.0 41.0 34 36.766183893824014 39.0 35.0 41.0 30.0 41.0 35 36.68616539353487 39.0 35.0 41.0 30.0 41.0 36 36.546862253591705 39.0 35.0 41.0 30.0 41.0 37 36.45385881833262 39.0 35.0 41.0 30.0 41.0 38 36.379674202546106 39.0 35.0 41.0 30.0 41.0 39 36.31834182549644 39.0 35.0 41.0 30.0 41.0 40 36.25303123319033 39.0 35.0 41.0 30.0 41.0 41 36.17002751294605 38.0 35.0 41.0 30.0 41.0 42 36.041524718309944 38.0 35.0 40.0 29.0 41.0 43 35.928576772043904 38.0 35.0 40.0 29.0 41.0 44 35.847590509517914 38.0 35.0 40.0 29.0 41.0 45 35.83207276859558 38.0 35.0 40.0 29.0 41.0 46 35.790689652306185 38.0 35.0 40.0 29.0 41.0 47 35.72945464519937 38.0 35.0 40.0 29.0 41.0 48 35.65655869685768 38.0 35.0 40.0 29.0 41.0 49 35.608904125042 38.0 34.0 40.0 29.0 41.0 50 35.50819035586339 37.0 34.0 40.0 28.0 41.0 51 35.303082946129486 37.0 34.0 40.0 28.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 8.0 9 14.0 10 27.0 11 47.0 12 63.0 13 78.0 14 101.0 15 156.0 16 283.0 17 573.0 18 1061.0 19 2070.0 20 3425.0 21 5337.0 22 8239.0 23 11956.0 24 17080.0 25 23730.0 26 31517.0 27 38621.0 28 45733.0 29 54430.0 30 66164.0 31 81690.0 32 101627.0 33 131194.0 34 206138.0 35 302343.0 36 257478.0 37 359808.0 38 549050.0 39 1068123.0 40 432.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 2.7519773816747395 89.44420761646693 3.82628252245149 3.9775324794068507 2 3.957910061046204 3.581165565713431 88.51248413285535 3.9484402403850147 3 30.960554486201374 17.162610179433806 38.97804901507928 12.898786319285543 4 28.70759806162567 16.460002921098287 39.90790228332516 14.924496733950882 5 26.111056357010458 15.560073098703436 42.51655585888008 15.812314685406026 6 24.838508387470625 15.129893878636677 43.75739922507775 16.274198508814948 7 24.55284041185111 18.137348616456233 40.84476143770283 16.465049533989827 8 26.842785540326 19.831793423729057 41.435749493260694 11.889671542684251 9 78.76254677022713 5.40575361367169 10.42472887814389 5.406970737957297 10 78.03399398443743 6.212944502694891 10.983448297154066 4.769613215713609 11 70.44427411301325 9.0210580312985 12.599344059067933 7.935323796620312 12 39.20956980296836 23.254554716564407 19.287620124229797 18.248255356237436 13 31.07938737681812 25.61256974715876 25.14180982225236 18.16623305377077 14 26.200618892856255 23.956033908488877 28.767029349913138 21.07631784874173 15 23.020866853727785 24.048357238445927 32.96165524153089 19.969120666295396 16 19.677634242871513 28.367189179112014 32.62442275654308 19.330753821473397 17 19.82235328902605 24.220031134632944 36.25439203751355 19.70322353882745 18 24.409665035522217 23.026893103239452 32.6330019984587 19.93043986277963 19 25.086742369818165 23.02003564689859 28.11278051746187 23.78044146582137 20 24.427595354266288 23.237841522105946 30.3864280548929 21.948135068734867 21 26.061480806840592 24.729323433264184 28.02787867705121 21.18131708284401 22 25.932109401067983 24.606275136585094 27.543077293923048 21.918538168423876 23 26.51294485892639 23.39081326463607 29.377253906375238 20.718987970062305 24 27.229148286110888 22.126814851053673 27.667936434051455 22.97610042878398 25 27.34602190348739 23.97535946726767 25.79585085299632 22.88276777624862 26 26.285609791141475 23.041943884039522 27.984982467473095 22.68746385734591 27 27.666719309765845 23.813956912612852 26.222141212540773 22.297182565080526 28 23.835538604213742 25.784540502927626 25.851452652677853 24.528468240180775 29 22.3882293988356 26.01089593409242 27.70771561802009 23.89315904905189 30 22.530425138544366 25.066674662084736 29.15650912130751 23.246391078063382 31 24.192749739060424 24.7223175471324 27.841154000064122 23.243778713743055 32 23.238702414893325 25.647836665483187 28.14424763313855 22.969213286484933 33 24.41690840931949 24.892507145410136 27.75295701829486 22.937627426975514 34 27.1210913983155 24.452501873183962 26.161106882511287 22.265299845989247 35 26.09621337791768 24.0658719537754 26.417356073568932 23.420558594737987 36 22.943564618612623 25.15772149583981 28.38028068667184 23.518433198875734 37 23.63652394053784 26.066022758442987 28.78617679294282 21.511276508076364 38 26.72698061744418 25.5210776240309 25.290863018301984 22.461078740222927 39 24.314877771035768 26.573326097875793 27.14688849597874 21.9649076351097 40 23.766221891850492 25.649231905517905 27.378290540035078 23.206255662596522 41 23.101434544243357 25.763552530490447 26.065132179697414 25.069880745568778 42 24.536394391016316 24.493735669103685 27.870216553127776 23.099653386752227 43 23.36813319258231 24.625333521740213 28.14534601359142 23.861187272086056 44 22.30721641894724 25.751173485927076 27.339431620770192 24.602178474355487 45 21.37291025697353 24.14994258735687 28.293805490477336 26.183341665192266 46 23.45440058706951 24.692305043406808 27.22834676523988 24.624947604283804 47 21.530720810687896 25.37264783310317 27.706320377985367 25.390310978223567 48 21.72240304269197 25.477795496996375 27.032745986755312 25.767055473556344 49 22.27509621219048 25.217034040294532 29.356384677770798 23.15148506974419 50 22.374306684446577 24.643263840484284 29.64347757938322 23.338951895685916 51 22.36109643305401 24.376090216814365 27.89996188322969 25.362851466901937 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 850.0 1 2072.0 2 3294.0 3 8028.5 4 12763.0 5 9155.5 6 5548.0 7 5747.0 8 5946.0 9 6133.0 10 6320.0 11 6796.5 12 7273.0 13 7260.5 14 7248.0 15 7923.5 16 8599.0 17 9843.0 18 11087.0 19 11071.0 20 11055.0 21 14172.0 22 17289.0 23 18452.5 24 19616.0 25 23744.0 26 34708.5 27 41545.0 28 45836.5 29 50128.0 30 58291.0 31 66454.0 32 77191.5 33 87929.0 34 100470.0 35 113011.0 36 118075.5 37 123140.0 38 136616.0 39 150092.0 40 166249.5 41 182407.0 42 196258.5 43 210110.0 44 233157.0 45 256204.0 46 277534.5 47 298865.0 48 291957.0 49 285049.0 50 256501.5 51 227954.0 52 216114.5 53 204275.0 54 205769.0 55 207263.0 56 197817.0 57 188371.0 58 172922.0 59 157473.0 60 140405.5 61 123338.0 62 103672.5 63 84007.0 64 73150.5 65 62294.0 66 50273.5 67 38253.0 68 32822.5 69 27392.0 70 21855.0 71 16318.0 72 13161.0 73 10004.0 74 8372.0 75 4725.5 76 2711.0 77 1865.5 78 1020.0 79 924.5 80 829.0 81 646.5 82 464.0 83 286.0 84 108.0 85 81.5 86 55.0 87 40.0 88 25.0 89 15.0 90 5.0 91 3.5 92 2.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 3368596.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 16.38850095724779 #Duplication Level Percentage of deduplicated Percentage of total 1 73.66353854230677 12.072349719148537 2 10.188934918127327 3.339627393181302 3 3.9533946244289195 1.943706347604948 4 2.1276164699976174 1.3947377822084848 5 1.3212261952152378 1.082645838251289 6 0.8951704670300032 0.8802301233492695 7 0.650722908544298 0.7465061106706906 8 0.5080831465458471 0.6661376906822468 9 0.3786383788353309 0.5584783890594215 >10 3.197047517981956 11.599057258581237 >50 1.3578382384421546 16.476531275078024 >100 1.7464727989353435 46.389313543067864 >500 0.00711799920581733 0.7682370005963192 >1k 0.003650256002983246 1.437498131586143 >5k 5.475384004474869E-4 0.6449433969341938 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source ACTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTCTGC 9448 0.2804729329370456 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7017 0.2083063685879815 No Hit ATGCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTCT 5097 0.15130932887173174 No Hit ATGCCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTC 4781 0.14192856608509896 No Hit ATCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTCTG 4036 0.11981252723686664 No Hit ATGTCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTC 3521 0.10452425877131007 No Hit ATTGCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTC 3432 0.10188220849279642 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 5.937191637109348E-5 0.0 0.0 0.10185252253461086 0.0 2 8.905787455664021E-5 0.0 0.0 0.49240098842366375 0.0 3 8.905787455664021E-5 0.0 0.0 0.6714963741570672 0.0 4 8.905787455664021E-5 0.0 0.0 0.9394418327398121 0.0 5 8.905787455664021E-5 0.0 0.0 1.9965588037271313 0.0 6 8.905787455664021E-5 0.0 0.0 2.2584780127982103 0.0 7 8.905787455664021E-5 0.0 0.0 2.6868760753738354 0.0 8 8.905787455664021E-5 0.0 0.0 3.883517049833224 0.0 9 1.1874383274218696E-4 0.0 0.0 4.042277554209528 0.0 10 1.4842979092773368E-4 0.0 0.0 4.314883708227404 0.0 11 1.7811574911328042E-4 0.0 0.0 4.530967797859999 0.0 12 1.7811574911328042E-4 0.0 0.0 5.168533121810986 0.0 13 2.0780170729882717E-4 0.0 0.0 5.6953995076880695 0.0 14 2.0780170729882717E-4 0.0 0.0 5.91097893603151 0.0 15 2.3748766548437392E-4 0.0 0.0 6.046940624521314 0.0 16 2.6717362366992066E-4 0.0 0.0 6.166218804510841 0.0 17 2.6717362366992066E-4 0.0 0.0 6.320288927493828 0.0 18 2.9685958185546736E-4 0.0 0.0 6.614803318652638 0.0 19 5.046612891542946E-4 0.0 0.0 6.9946054676785225 0.0 20 5.046612891542946E-4 0.0 0.0 7.380047948759661 0.0 21 5.046612891542946E-4 0.0 0.0 7.649002729920714 0.0 22 5.937191637109347E-4 0.0 0.0 7.94194376529569 0.0 23 6.234051218964815E-4 0.0 0.0 8.362890652366742 0.0 24 6.530910800820282E-4 0.0 0.0 8.751123613517324 0.0 25 6.530910800820282E-4 0.0 0.0 9.112698584217283 0.0 26 6.530910800820282E-4 0.0 0.0 9.407391091125204 0.0 27 6.530910800820282E-4 0.0 0.0 9.68219400604881 0.0 28 7.421489546386684E-4 0.0 0.0 9.946191232192877 0.0 29 7.718349128242152E-4 0.0 0.0 10.220311370078216 0.0 30 7.718349128242152E-4 0.0 0.0 10.495411144583677 0.0 31 7.718349128242152E-4 0.0 0.0 10.801473373476664 0.0 32 7.718349128242152E-4 0.0 0.0 11.152183283480714 0.0 33 7.718349128242152E-4 0.0 0.0 11.459284520910195 0.0 34 8.608927873808554E-4 0.0 0.0 11.775380603669896 0.0 35 8.905787455664022E-4 0.0 0.0 12.079810104862679 0.0 36 9.202647037519489E-4 0.0 0.0 12.409888273927773 0.0 37 9.499506619374957E-4 0.0 0.0 12.772027277833258 0.0 38 0.001039008536494136 0.0 0.0 13.085303194565332 0.0 39 0.001039008536494136 0.0 0.0 13.418587447114465 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTACGAT 35 1.2128658E-7 45.0 34 CGTAAGT 20 7.0352294E-4 45.0 28 ACGTATA 25 3.892416E-5 45.0 13 TACGCAT 115 0.0 41.08696 2 ATCGGTT 365 0.0 40.068493 1 GCGATAC 90 0.0 40.0 11 ACTACCG 40 3.460882E-7 39.375 12 ATCGATT 355 0.0 38.66197 1 TACGCTA 105 0.0 38.57143 2 AACCGTA 35 6.251883E-6 38.571426 40 CCCGTAT 35 6.251883E-6 38.571426 20 CGAACCC 250 0.0 37.800003 19 TAATACG 30 1.1403901E-4 37.499996 12 CGCGATA 30 1.1403901E-4 37.499996 16 CGAATCG 30 1.1403901E-4 37.499996 45 ATCCGAT 115 0.0 37.173916 1 CGCAATA 55 2.752131E-9 36.81818 22 ATCGCGC 165 0.0 36.81818 1 CGTTTTT 4405 0.0 36.010216 1 CGCATTA 25 0.0021076852 36.0 42 >>END_MODULE