Basic Statistics
Measure | Value |
---|---|
Filename | SRR1545654_1.fastq.gz |
File type | Conventional base calls |
Encoding | Illumina 1.5 |
Total Sequences | 2384204 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 46 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
ACTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCTGC | 10185 | 0.4271865998043791 | Illumina Single End Adapter 2 (95% over 21bp) |
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6754 | 0.28328112862825494 | No Hit |
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT | 5293 | 0.222002815195344 | No Hit |
ATCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCTG | 4846 | 0.2032544195043713 | No Hit |
ATGCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCT | 4301 | 0.18039563728607114 | No Hit |
CTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCTGCT | 4027 | 0.1689033320974212 | Illumina Single End Adapter 2 (95% over 22bp) |
ATGCCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTC | 3555 | 0.1491063684147833 | No Hit |
ATTGCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTC | 3455 | 0.14491209644812272 | No Hit |
CCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCTGC | 3437 | 0.14415712749412382 | Illumina Single End Adapter 2 (95% over 21bp) |
ATGTCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTC | 3262 | 0.13681715155246785 | No Hit |
ATATCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTC | 3092 | 0.12968688920914484 | No Hit |
ATGGCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTC | 2914 | 0.12222108510848903 | No Hit |
ATAGCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTC | 2483 | 0.10414377293218198 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ACTATCG | 60 | 0.0 | 45.000004 | 44 |
GGCGTAA | 30 | 2.1664873E-6 | 45.000004 | 24 |
AGGCGTA | 30 | 2.1664873E-6 | 45.000004 | 14 |
CCCGTAG | 30 | 2.1664873E-6 | 45.000004 | 24 |
ACGTAAC | 30 | 2.1664873E-6 | 45.000004 | 41 |
TACCCGC | 20 | 7.034813E-4 | 45.0 | 28 |
CGAGTTA | 50 | 2.1827873E-11 | 45.0 | 35 |
GTCGACA | 40 | 6.8212103E-9 | 45.0 | 39 |
ACGTTAC | 50 | 2.1827873E-11 | 45.0 | 25 |
CCTAGCG | 25 | 3.8920713E-5 | 45.0 | 23 |
TAGAACG | 85 | 0.0 | 45.0 | 2 |
CACGCTA | 25 | 3.8920713E-5 | 45.0 | 28 |
CGATTGA | 20 | 7.034813E-4 | 45.0 | 19 |
CGCGACA | 35 | 1.2126657E-7 | 45.0 | 34 |
ATCGTAC | 50 | 2.1827873E-11 | 45.0 | 1 |
TACGATG | 40 | 6.8212103E-9 | 45.0 | 19 |
CGCTAGC | 25 | 3.8920713E-5 | 45.0 | 28 |
TATTCGA | 35 | 1.2126657E-7 | 45.0 | 38 |
CGAATAC | 25 | 3.8920713E-5 | 45.0 | 18 |
GTATCGC | 70 | 0.0 | 45.0 | 5 |