##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545653_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1915090 Sequences flagged as poor quality 0 Sequence length 52 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.53517693685414 33.0 31.0 34.0 31.0 34.0 2 32.94887185458647 34.0 31.0 34.0 31.0 34.0 3 33.03869739803351 34.0 33.0 34.0 31.0 34.0 4 36.41229028400754 37.0 37.0 37.0 35.0 37.0 5 36.38559127769452 37.0 37.0 37.0 35.0 37.0 6 36.390254243925874 37.0 37.0 37.0 35.0 37.0 7 36.473957881875 37.0 37.0 37.0 35.0 37.0 8 36.504585685268054 37.0 37.0 37.0 35.0 37.0 9 38.302478734680875 39.0 39.0 39.0 37.0 39.0 10 38.07334067850597 39.0 39.0 39.0 35.0 39.0 11 37.919964596964114 39.0 38.0 39.0 35.0 39.0 12 37.64955119602734 39.0 37.0 39.0 35.0 39.0 13 37.61267198930599 39.0 37.0 39.0 35.0 39.0 14 38.99327394534983 41.0 38.0 41.0 35.0 41.0 15 38.997882083870735 41.0 38.0 41.0 35.0 41.0 16 39.060303171130336 41.0 38.0 41.0 35.0 41.0 17 39.004830582374716 41.0 38.0 41.0 35.0 41.0 18 38.995131299312305 41.0 38.0 41.0 35.0 41.0 19 38.95534831261194 41.0 38.0 41.0 35.0 41.0 20 38.87729976136892 41.0 38.0 41.0 35.0 41.0 21 38.83794077562934 41.0 38.0 41.0 35.0 41.0 22 38.93904202935632 41.0 38.0 41.0 35.0 41.0 23 38.93648131419411 41.0 38.0 41.0 35.0 41.0 24 38.889290842728016 41.0 38.0 41.0 35.0 41.0 25 38.8047590452668 41.0 38.0 41.0 35.0 41.0 26 38.70057125252599 40.0 38.0 41.0 35.0 41.0 27 38.62396493115206 40.0 38.0 41.0 35.0 41.0 28 38.533425583131866 40.0 37.0 41.0 35.0 41.0 29 38.53217551133367 40.0 37.0 41.0 35.0 41.0 30 38.484663383966286 40.0 37.0 41.0 35.0 41.0 31 38.39081609741579 40.0 37.0 41.0 35.0 41.0 32 38.38350155867348 40.0 37.0 41.0 35.0 41.0 33 38.306071255136835 40.0 37.0 41.0 34.0 41.0 34 38.23728858695936 40.0 36.0 41.0 34.0 41.0 35 38.1495788709669 40.0 36.0 41.0 34.0 41.0 36 38.04208366186445 40.0 36.0 41.0 34.0 41.0 37 37.96847719950498 40.0 36.0 41.0 34.0 41.0 38 37.912167052201205 40.0 35.0 41.0 34.0 41.0 39 37.84745416664491 40.0 35.0 41.0 34.0 41.0 40 37.70920687800573 40.0 35.0 41.0 33.0 41.0 41 37.5575795393428 40.0 35.0 41.0 33.0 41.0 42 37.51327196110888 40.0 35.0 41.0 33.0 41.0 43 37.43068628628419 40.0 35.0 41.0 33.0 41.0 44 37.31666344662653 39.0 35.0 41.0 33.0 41.0 45 37.22522544632367 39.0 35.0 41.0 33.0 41.0 46 37.18348484927601 39.0 35.0 41.0 33.0 41.0 47 37.15995384028949 39.0 35.0 41.0 33.0 41.0 48 37.060130333300265 39.0 35.0 41.0 33.0 41.0 49 36.999391151329704 39.0 35.0 41.0 33.0 41.0 50 36.913762277490875 39.0 35.0 41.0 33.0 41.0 51 36.78669931961422 38.0 35.0 41.0 32.0 41.0 52 36.46886099347811 38.0 35.0 40.0 32.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 2.0 10 1.0 11 5.0 12 9.0 13 25.0 14 39.0 15 69.0 16 103.0 17 184.0 18 342.0 19 589.0 20 850.0 21 1271.0 22 1952.0 23 2925.0 24 4080.0 25 5240.0 26 6618.0 27 8378.0 28 10663.0 29 13574.0 30 17580.0 31 23195.0 32 30473.0 33 41389.0 34 87596.0 35 183913.0 36 110412.0 37 165206.0 38 280566.0 39 916338.0 40 1502.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 27.733161365784376 14.364755703387308 45.48788829767791 12.414194633150402 2 25.319280033836527 13.34673566255372 48.97096220020991 12.36302210339984 3 25.926144463184496 14.294158499078371 44.960289072576224 14.819407965160906 4 23.863317128698913 14.204293270812338 47.03183662386624 14.900552976622508 5 23.67831276859051 16.978784286900357 44.1502488133717 15.19265413113744 6 24.324809800061615 20.05200799962404 43.08100402592046 12.542178174393893 7 85.62281668224469 2.7081755948806583 6.94030045585325 4.728707267021393 8 86.38711496587628 3.1574495193437384 7.10770773175151 3.3477277830284735 9 78.35965933715909 4.932457482415971 9.251627860831606 7.456255319593335 10 40.182811251690524 24.775389146202006 15.46501730989144 19.576782292216034 11 31.479512712196296 23.160634748236376 26.352129664924362 19.00772287464297 12 27.969808207447173 24.17828927100032 27.49343372896313 20.35846879258938 13 22.18000198424095 25.55498697189166 33.02648961667598 19.23852142719141 14 18.17016432648074 33.31723313264651 28.69604039496838 19.81656214590437 15 16.602248458297 24.43049673905665 36.42706086920197 22.54019393344438 16 20.14448407124469 23.030144797372447 34.02968006725533 22.795691064127535 17 19.944232385945305 23.253894072863414 28.33386420481544 28.46800933637584 18 21.352207990225004 23.76353069568532 30.704457753943682 24.179803560146 19 24.37932420930609 25.764950994470233 27.416779368071474 22.438945428152202 20 26.688458505866564 22.04100068404096 26.146604076048646 25.123936734043834 21 23.667295009634014 26.486170362750578 27.320230380817613 22.5263042467978 22 28.224156567054287 21.68843239743302 25.047177939417992 25.0402330960947 23 25.988961354296663 25.35118453962999 23.019022604681762 25.64083150139158 24 25.199964492530373 20.475591225477654 30.473398117059773 23.851046164932196 25 28.330365674720248 23.729119780271425 24.31906594468145 23.62144860032688 26 23.608133299218316 27.3952660188294 23.937151778767575 25.059448903184705 27 23.84269146619741 25.072398686223625 25.33854805779363 25.74636178978534 28 22.21707595987656 26.00013576385444 28.307494686933772 23.475293589335227 29 22.049094298440284 22.88942034055841 28.953104031664306 26.108381329337004 30 23.4335200956613 26.48517824227582 28.250317217467586 21.830984444595295 31 22.57094966816181 30.72487454897681 24.29368854727454 22.41048723558684 32 24.2444480416064 24.737375266958733 27.85352124443238 23.16465544700249 33 25.251241456015123 26.599637614942377 25.670542898767163 22.47857803027534 34 22.098178153507146 25.576656971735012 25.585324971672353 26.739839903085493 35 23.33597898793268 23.649175756752946 30.278890287140552 22.735954968173818 36 26.054597956231824 26.318710869985225 24.716801821324324 22.90988935245863 37 23.358641108250787 26.29672756893932 27.285453947334066 23.059177375475826 38 21.14689126881765 25.364917575675292 30.931548908928562 22.55664224657849 39 21.433979604091714 27.98134813507459 26.199551979280344 24.385120281553345 40 26.068069907941666 24.204606572014892 28.50513552887854 21.222187991164905 41 22.28610665817272 24.082471319885748 27.888141027314646 25.743280994626883 42 21.775582348610246 26.538073928640433 24.099024066754044 27.58731965599528 43 21.871818034661555 23.539468118991795 27.639014354416762 26.949699491929884 44 25.87424089729464 23.96101488702881 25.373794443081003 24.790949772595543 45 20.70492770574751 25.610284634142523 27.184988695048272 26.499798965061693 46 21.373564688865798 26.639218000198422 25.717746946618696 26.269470364317083 47 22.317123477225614 24.548715726153862 30.52812139377262 22.60603940284791 48 21.5310507600165 22.238276007916078 32.70551253465895 23.525160697408477 49 20.703517850336013 23.2815167955553 27.72183030562532 28.293135048483357 50 20.57109587538967 23.615756961813805 31.698927987718594 24.114219175077935 51 22.615072920854896 23.94482765823016 27.98437671336595 25.455722707548993 52 21.90466244406268 22.44672574134897 28.913941381345005 26.734670433243345 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 279.0 1 240.0 2 201.0 3 151.5 4 102.0 5 147.5 6 193.0 7 316.0 8 439.0 9 792.0 10 1145.0 11 1345.5 12 1546.0 13 1530.5 14 1477.5 15 1440.0 16 1667.0 17 1894.0 18 2403.5 19 2913.0 20 3342.0 21 3771.0 22 4326.5 23 4882.0 24 5888.5 25 6895.0 26 9621.5 27 12348.0 28 16502.5 29 20657.0 30 23146.0 31 25635.0 32 28939.0 33 32243.0 34 39622.5 35 47002.0 36 52746.5 37 58491.0 38 61106.5 39 76057.5 40 88393.0 41 105817.0 42 123241.0 43 139955.5 44 156670.0 45 179205.5 46 201741.0 47 199320.5 48 196900.0 49 170989.0 50 145078.0 51 129257.0 52 113436.0 53 105060.0 54 96684.0 55 91578.5 56 86473.0 57 85323.0 58 84173.0 59 81996.5 60 79820.0 61 74985.5 62 70151.0 63 63584.0 64 49360.0 65 41703.0 66 34273.0 67 26843.0 68 23848.5 69 20854.0 70 17509.0 71 14164.0 72 12506.5 73 10849.0 74 8120.0 75 5391.0 76 4821.0 77 4251.0 78 2945.0 79 1639.0 80 1232.5 81 826.0 82 844.0 83 862.0 84 603.5 85 345.0 86 242.0 87 139.0 88 95.5 89 40.5 90 29.0 91 26.0 92 23.0 93 21.5 94 20.0 95 12.0 96 4.0 97 4.0 98 4.0 99 3.0 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 1915090.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 15.761987451862627 #Duplication Level Percentage of deduplicated Percentage of total 1 67.32233620030867 10.611338184193423 2 12.514940551955098 3.9452067188144597 3 5.5726369708318275 2.6350750202411106 4 3.1067217301228816 1.9587243570650323 5 1.9471595728085045 1.5345552376690919 6 1.304820329030198 1.233993699186555 7 0.9433169317386411 1.0407984748835812 8 0.6670654474495902 0.8411421769817253 9 0.49492146136435367 0.7020851277314211 >10 3.3719738072504093 10.949128393465669 >50 0.9653645151409204 11.205242338769148 >100 1.7721554782713027 48.904120738961346 >500 0.010615682385715215 1.082640202870141 >1k 0.003980880894643205 1.4322956018845157 >5k 0.0019904404473216025 1.9236537272827634 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCTGCTT 8272 0.4319379245884006 Illumina Single End Adapter 2 (95% over 23bp) GTCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCTGC 6153 0.3212903832195876 Illumina Single End Adapter 2 (95% over 21bp) GCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCTGCT 6152 0.3212381663524952 Illumina Single End Adapter 2 (95% over 22bp) TGCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCTGC 5915 0.3088627688515944 Illumina Single End Adapter 2 (95% over 21bp) GCCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCTGC 5251 0.2741907691022354 Illumina Single End Adapter 2 (95% over 21bp) TTCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCTGC 5046 0.26348631134829176 Illumina Single End Adapter 2 (95% over 21bp) GGCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCTGC 4688 0.2447926729292096 Illumina Single End Adapter 2 (95% over 21bp) ATCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCTGC 4496 0.23476703444746724 Illumina Single End Adapter 2 (95% over 21bp) AGCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCTGC 3183 0.16620628795513528 Illumina Single End Adapter 2 (95% over 21bp) ACCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCTGC 2822 0.1473559989347759 Illumina Single End Adapter 2 (95% over 21bp) TCCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCTGC 2130 0.11122192690682943 Illumina Single End Adapter 2 (95% over 21bp) CCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCTGCT 2011 0.10500811972283287 Illumina Single End Adapter 2 (95% over 22bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.4501093943365586 0.0 2 0.0 0.0 0.0 0.9962978241231483 0.0 3 0.0 0.0 0.0 3.512889733641761 0.0 4 5.221686709240819E-5 0.0 0.0 4.059965850168922 0.0 5 5.221686709240819E-5 0.0 0.0 4.957939313557065 0.0 6 5.221686709240819E-5 0.0 0.0 7.748460907842452 0.0 7 1.0443373418481638E-4 0.0 0.0 8.076435050049867 0.0 8 1.0443373418481638E-4 0.0 0.0 8.727788250160566 0.0 9 1.0443373418481638E-4 0.0 0.0 9.143904464019968 0.0 10 1.0443373418481638E-4 0.0 0.0 10.53772929731762 0.0 11 1.0443373418481638E-4 0.0 0.0 11.733495553733768 0.0 12 1.0443373418481638E-4 0.0 0.0 12.254619887316 0.0 13 1.0443373418481638E-4 0.0 0.0 12.490431259105316 0.0 14 1.0443373418481638E-4 0.0 0.0 12.630059161710415 0.0 15 1.0443373418481638E-4 0.0 0.0 12.849056702295975 0.0 16 1.0443373418481638E-4 0.0 0.0 13.402451059741317 0.0 17 1.0443373418481638E-4 0.0 0.0 14.127430042452312 0.0 18 1.0443373418481638E-4 0.0 0.0 14.912406205452486 0.0 19 1.5665060127722456E-4 0.0 0.0 15.387631912860492 0.0 20 1.5665060127722456E-4 0.0 0.0 15.890793644162937 0.0 21 1.5665060127722456E-4 0.0 0.0 16.68532549384102 0.0 22 1.5665060127722456E-4 0.0 0.0 17.365815705789284 0.0 23 2.0886746836963277E-4 0.0 0.0 18.07481632717 0.0 24 3.133012025544491E-4 0.0 0.0 18.64246588933157 0.0 25 3.6551806964685735E-4 0.0 0.0 19.11831819914469 0.0 26 4.1773493673926554E-4 0.0 0.0 19.54597434063151 0.0 27 4.1773493673926554E-4 0.0 0.0 19.9484097353127 0.0 28 4.1773493673926554E-4 0.0 0.0 20.35862544319066 0.0 29 4.1773493673926554E-4 0.0 0.0 20.796620524361778 0.0 30 4.1773493673926554E-4 0.0 0.0 21.247565388571818 0.0 31 4.1773493673926554E-4 0.0 0.0 21.67172299996345 0.0 32 4.1773493673926554E-4 0.0 0.0 22.076664804265075 0.0 33 4.1773493673926554E-4 0.0 0.0 22.502545572270755 0.0 34 4.1773493673926554E-4 0.0 0.0 22.914327786161486 0.0 35 4.1773493673926554E-4 0.0 0.0 23.419317107812166 0.0 36 4.1773493673926554E-4 0.0 0.0 23.873708285250302 0.0 37 4.1773493673926554E-4 0.0 0.0 24.305541776104516 0.0 38 4.699518038316737E-4 0.0 0.0 24.710379146671958 0.0 39 6.266024051088982E-4 0.0 0.0 25.133074685785 0.0 40 6.266024051088982E-4 0.0 0.0 25.55973870679707 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTATCG 20 6.312512E-4 46.000004 11 ATCTAAC 20 6.312512E-4 46.000004 23 ACGTTAC 20 6.312512E-4 46.000004 23 ATTACGC 35 1.0200529E-7 46.000004 14 TCTAACG 20 6.312512E-4 46.000004 33 ATAAGCG 40 5.6152203E-9 46.000004 33 AACGACA 20 6.312512E-4 46.000004 36 GCGATGA 20 6.312512E-4 46.000004 41 TTACGAC 35 1.0200529E-7 46.000004 19 TGAATCG 35 1.0200529E-7 46.000004 36 ATACCGG 20 6.312512E-4 46.000004 24 GTAACGC 35 1.0200529E-7 46.000004 15 TACGTCC 40 5.6152203E-9 46.000004 22 GTACGCT 35 1.0200529E-7 46.000004 33 AACGTTG 25 3.4180146E-5 46.0 10 CGTGGTA 30 1.8620576E-6 46.0 11 GTCGACA 25 3.4180146E-5 46.0 37 TTTACGA 25 3.4180146E-5 46.0 26 CTATACG 25 3.4180146E-5 46.0 12 CGCATGT 30 1.8620576E-6 46.0 44 >>END_MODULE