SRR1545652_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545652_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2125307
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ACTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCTTCTGC	9019	0.42436222155199227	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5295	0.24914047711695297	No Hit
ATGCTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCTTCT	3974	0.18698475090892752	No Hit
GCCAGACAAAGGTTGCCAATCTTTGTGGTATAAACCAGAAGCTAATGGCTG	3889	0.1829853287078055	No Hit
ATCTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCTTCTG	3832	0.180303363231759	No Hit
CTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCTTCTGCT	3324	0.15640093407681807	No Hit
ATGCCTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCTTC	3116	0.14661411269054306	No Hit
ATGTCTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCTTC	2903	0.13659203117479027	No Hit
ATTGCTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCTTC	2845	0.1338630136728482	No Hit
ATATCTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCTTC	2397	0.11278370607164048	No Hit
ATAGCTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCTTC	2345	0.11033700072507172	No Hit
CCTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCTTCTGC	2276	0.10709041093827858	No Hit
ATGGCTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCTTC	2263	0.10647873460163637	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGAATA	30	2.1663745E-6	45.000004	44
AAATCGT	30	2.1663745E-6	45.000004	40
CTCCGAT	20	7.03464E-4	45.000004	22
CCGATCA	20	7.03464E-4	45.000004	24
GACACGT	20	7.03464E-4	45.000004	11
CCAATCG	40	6.8193913E-9	45.000004	18
ACCGAAC	30	2.1663745E-6	45.000004	34
CGTTCGA	20	7.03464E-4	45.000004	21
AATGCGT	30	2.1663745E-6	45.000004	32
CTACGAC	30	2.1663745E-6	45.000004	31
ACTACGT	20	7.03464E-4	45.000004	29
ACTACGA	30	2.1663745E-6	45.000004	44
ACGCTAA	20	7.03464E-4	45.000004	29
TACTACG	30	2.1663745E-6	45.000004	43
CGGTCTA	30	2.1663745E-6	45.000004	33
CAATCGT	40	6.8193913E-9	45.000004	19
CGATCAA	30	2.1663745E-6	45.000004	34
TCGACTA	20	7.03464E-4	45.000004	2
TCGACGA	20	7.03464E-4	45.000004	2
TGTCGAC	30	2.1663745E-6	45.000004	29