SRR1545648_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545648_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2008270
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4847	0.2413520094409616	No Hit
ACTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTCTTCTGC	4590	0.22855492538353905	No Hit
ATCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTCTTCTG	3734	0.18593117459305772	No Hit
CTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTCTTCTGCT	2608	0.12986301642707404	Illumina Single End Adapter 1 (95% over 21bp)
ATGCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTCTTCT	2389	0.11895810822249997	No Hit
CCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTCTTCTGC	2285	0.11377952167786205	No Hit
ATGCCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTCTTC	2023	0.10073346711348574	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTAAGCG	30	2.1663145E-6	45.000004	17
TCGATAG	30	2.1663145E-6	45.000004	8
CATTACG	60	0.0	45.000004	26
CGTACGA	30	2.1663145E-6	45.000004	37
TACTCGA	30	2.1663145E-6	45.000004	41
AATCCGT	25	3.8918515E-5	45.0	42
ACGCATC	20	7.034548E-4	45.0	12
GACGTAA	20	7.034548E-4	45.0	21
CCCAACG	25	3.8918515E-5	45.0	34
TACGATC	35	1.2125383E-7	45.0	13
ACTAACG	20	7.034548E-4	45.0	38
AGTTACG	20	7.034548E-4	45.0	3
CTCGAAT	40	6.8193913E-9	45.0	43
TTACGCC	25	3.8918515E-5	45.0	1
CGTCGAA	25	3.8918515E-5	45.0	33
CGCAATA	25	3.8918515E-5	45.0	33
GCCGTAT	40	6.8193913E-9	45.0	24
ATACCCG	35	1.2125383E-7	45.0	22
TAGTCGA	25	3.8918515E-5	45.0	24
GCGTAAG	25	3.8918515E-5	45.0	3