##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545648_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2008270 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.924259686197573 31.0 31.0 34.0 31.0 34.0 2 32.58680057960334 34.0 31.0 34.0 31.0 34.0 3 32.57792826661753 34.0 31.0 34.0 31.0 34.0 4 36.046736245624345 37.0 35.0 37.0 35.0 37.0 5 35.84791536994528 37.0 35.0 37.0 35.0 37.0 6 35.85173358163992 37.0 35.0 37.0 35.0 37.0 7 35.85560258331798 37.0 35.0 37.0 35.0 37.0 8 35.826192693213564 37.0 35.0 37.0 35.0 37.0 9 37.95482679121831 39.0 38.0 39.0 35.0 39.0 10 37.8456104009919 39.0 38.0 39.0 35.0 39.0 11 37.70489027869758 39.0 38.0 39.0 35.0 39.0 12 37.30407116572971 39.0 37.0 39.0 34.0 39.0 13 37.078050262165945 39.0 37.0 39.0 33.0 39.0 14 37.89879846833344 40.0 36.0 41.0 33.0 41.0 15 37.868071524247235 40.0 36.0 41.0 33.0 41.0 16 37.89179592385486 40.0 36.0 41.0 33.0 41.0 17 37.91744835106833 40.0 36.0 41.0 33.0 41.0 18 37.9776404567115 40.0 36.0 41.0 33.0 41.0 19 37.94317148590578 40.0 36.0 41.0 33.0 41.0 20 37.8886967389843 40.0 36.0 41.0 33.0 41.0 21 37.87204708530228 40.0 36.0 41.0 33.0 41.0 22 37.80571935048574 40.0 36.0 41.0 33.0 41.0 23 37.70995184910395 40.0 35.0 41.0 33.0 41.0 24 37.67140175374825 40.0 35.0 41.0 33.0 41.0 25 37.591166028472266 40.0 35.0 41.0 33.0 41.0 26 37.52804901731341 40.0 35.0 41.0 33.0 41.0 27 37.45180179955882 40.0 35.0 41.0 32.0 41.0 28 37.36596921728652 39.0 35.0 41.0 32.0 41.0 29 37.31447165968719 39.0 35.0 41.0 32.0 41.0 30 37.22561109810932 39.0 35.0 41.0 32.0 41.0 31 37.12442998202433 39.0 35.0 41.0 32.0 41.0 32 37.011204170753935 39.0 35.0 41.0 31.0 41.0 33 36.92504742888158 39.0 35.0 41.0 31.0 41.0 34 36.7941820571935 39.0 35.0 41.0 31.0 41.0 35 36.72613891558406 39.0 35.0 41.0 31.0 41.0 36 36.61866631478835 39.0 35.0 41.0 31.0 41.0 37 36.41831974784267 39.0 35.0 41.0 30.0 41.0 38 36.41071270297321 38.0 35.0 41.0 30.0 41.0 39 36.35720445955972 38.0 35.0 41.0 30.0 41.0 40 36.30578657252262 38.0 35.0 41.0 30.0 41.0 41 36.205164146255235 38.0 35.0 41.0 30.0 41.0 42 36.0437092622008 38.0 35.0 40.0 30.0 41.0 43 35.9598604769279 38.0 35.0 40.0 30.0 41.0 44 35.8959577148491 38.0 35.0 40.0 30.0 41.0 45 35.873311357536586 38.0 35.0 40.0 30.0 41.0 46 35.808095027063096 38.0 35.0 40.0 29.0 41.0 47 35.707526876366224 37.0 35.0 40.0 29.0 41.0 48 35.633570187275616 37.0 35.0 40.0 29.0 41.0 49 35.5813247222734 37.0 34.0 40.0 29.0 41.0 50 35.46413281082723 37.0 34.0 40.0 29.0 41.0 51 35.276057502228284 37.0 34.0 40.0 28.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 2.0 9 7.0 10 15.0 11 24.0 12 26.0 13 43.0 14 49.0 15 87.0 16 139.0 17 287.0 18 483.0 19 860.0 20 1525.0 21 2476.0 22 3900.0 23 5788.0 24 8652.0 25 12552.0 26 16810.0 27 21108.0 28 24460.0 29 29348.0 30 36345.0 31 45381.0 32 57592.0 33 75094.0 34 124183.0 35 221577.0 36 151137.0 37 213312.0 38 327665.0 39 627045.0 40 297.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 2.3745811071220504 90.69144089191195 3.2700782265332853 3.6638997744327204 2 3.6513516608822516 2.874464090983782 90.47025549353424 3.00392875459973 3 28.954274076692876 15.893281281899347 41.48849507287367 13.663949568534111 4 27.18892380008664 15.712130341039801 42.834180662958666 14.264765195914892 5 25.786522728517582 14.400752886813029 45.71576531044133 14.096959074228065 6 23.985121522504443 15.237044819670661 45.25307852031848 15.52475513750641 7 23.6047941760819 17.72326430211077 42.68405144726556 15.987890074541768 8 26.829111623437086 20.23343474731983 41.634491378151345 11.302962251091737 9 82.10768472366763 4.549139308957461 9.091855178835514 4.251320788539389 10 81.98982208567574 5.4090834399757 8.784824749660155 3.8162697246884134 11 75.79463916704428 7.461048564187086 10.31290613313947 6.431406135629174 12 42.28589781254512 24.093573075333495 15.931821916375785 17.688707195745593 13 33.685809179044654 24.752149860327545 23.25523958431884 18.30680137630896 14 29.592335691913934 23.54538981312274 27.046960817021613 19.815313677941713 15 22.733745960453525 25.314972588347185 31.024264665607713 20.92701678559158 16 19.245768746234322 31.049062128100307 29.80485691664965 19.90031220901572 17 18.43492159918736 24.459310750048548 37.733023945983355 19.37274370478073 18 22.22166342175106 21.51867029831646 35.58286485382941 20.676801426103065 19 22.843292983513173 21.2482385336633 29.168737271382835 26.73973121144069 20 22.974201676069452 23.541854431923994 30.703540858549893 22.780403033456658 21 27.289009943882046 24.220299063372952 27.153121841186696 21.337569151558306 22 29.63107550279594 21.559501461456875 26.70373007613518 22.105692959612007 23 27.049052169280024 23.709361789002475 26.981581161895562 22.26000487982194 24 28.197602911959045 22.42178591524048 25.034781179821437 24.34582999297903 25 28.324229311795722 24.617257639660007 24.43745113953801 22.62106190900626 26 26.594929964596393 21.183755172362282 28.443287008221006 23.77802785482032 27 27.659527852330612 22.114954662470684 26.014231154177477 24.211286331021228 28 24.871107968550046 26.29038924049057 25.003560278249438 23.834942512709944 29 24.760515269361193 25.173258575789113 27.013648563191207 23.052577591658494 30 23.94448953576959 24.901581958601184 28.56906690833404 22.584861597295184 31 24.807720077479622 24.773362147520007 26.77369078858918 23.64522698641119 32 24.838094479327978 24.803885931672536 26.90982786179149 23.448191727207995 33 26.338689518839598 25.574200680187424 23.663551215722986 24.423558585249992 34 28.83217894008276 25.4349265785975 25.043146588855087 20.68974789246466 35 28.340412394747716 25.235451408426158 23.962714176878606 22.461422019947516 36 25.906576306970674 24.90128319399284 26.32210808307648 22.870032415960008 37 24.78366952650789 24.02998600785751 27.639759594078484 23.546584871556114 38 27.04073655434777 26.990344923740334 23.79545579030708 22.173462731604815 39 27.066330722462617 27.787996633918745 24.521702759091156 20.62396988452748 40 25.49218979519686 26.39988646944883 25.43029572716816 22.67762800818615 41 25.13651052896274 26.13582834977369 24.62741563634372 24.100245484919856 42 25.689225054400055 23.281132517042032 28.28748126496935 22.742161163588563 43 22.95204330095057 24.88131575933515 27.820064035214386 24.34657690449989 44 23.966100175773178 26.05167631842332 24.97562578736923 25.006597718434275 45 23.446399139557926 24.66276944833115 26.08703013041075 25.803801281700167 46 25.65611197697521 24.433816170136485 26.36517998077948 23.54489187210883 47 23.08295199350685 24.86338988283448 26.242985255966577 25.81067286769209 48 22.420242298097367 26.373844154421466 25.507327202019646 25.698586345461514 49 24.464638718897362 24.243652496925215 28.100056267334573 23.191652516842858 50 24.314509503204253 22.487364746772098 29.36721655952636 23.830909190497295 51 22.694309032152052 24.25869031554522 27.11637379436032 25.930626857942407 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 771.0 1 1716.5 2 2662.0 3 5849.5 4 9037.0 5 6400.5 6 3764.0 7 3680.0 8 3596.0 9 3886.0 10 4176.0 11 4182.5 12 4189.0 13 4136.5 14 4084.0 15 4243.5 16 4403.0 17 4483.5 18 4564.0 19 4953.5 20 5343.0 21 6845.0 22 8347.0 23 9859.0 24 11371.0 25 12769.5 26 17954.5 27 21741.0 28 24152.5 29 26564.0 30 30626.5 31 34689.0 32 38034.5 33 41380.0 34 45629.0 35 49878.0 36 53980.0 37 58082.0 38 69491.0 39 80900.0 40 95523.0 41 110146.0 42 118500.5 43 126855.0 44 131884.0 45 136913.0 46 146656.5 47 156400.0 48 163987.5 49 171575.0 50 161365.5 51 151156.0 52 144268.5 53 137381.0 54 132630.0 55 127879.0 56 128718.5 57 129558.0 58 120456.5 59 111355.0 60 100433.5 61 89512.0 62 74961.0 63 60410.0 64 46994.0 65 33578.0 66 30193.0 67 26808.0 68 22749.0 69 18690.0 70 14624.5 71 10559.0 72 8846.0 73 7133.0 74 6174.0 75 3420.0 76 1625.0 77 1398.5 78 1172.0 79 766.5 80 361.0 81 260.0 82 159.0 83 100.0 84 41.0 85 42.5 86 44.0 87 37.0 88 30.0 89 17.0 90 4.0 91 2.5 92 1.0 93 0.5 94 0.0 95 0.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2008270.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 15.952268335519959 #Duplication Level Percentage of deduplicated Percentage of total 1 73.31837127849215 11.695943325577863 2 10.776081984073173 3.4380590283099512 3 4.374201826833521 2.093353238861098 4 2.1921379263997336 1.398782897215954 5 1.3019930635868224 1.0384871360661347 6 0.8238117764215428 0.7884999909262694 7 0.5879997945017756 0.6565951352186042 8 0.4258890497000299 0.5435117121579579 9 0.3240626172354528 0.4652580444885754 >10 2.690369199050898 10.03842552136998 >50 1.3008390298647003 15.471729723116248 >100 1.8685847967533253 49.37844852101969 >500 0.010020900535601679 1.0958135264777318 >1k 0.005636756551275944 1.8970921991939436 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4847 0.2413520094409616 No Hit ACTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTCTTCTGC 4590 0.22855492538353905 No Hit ATCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTCTTCTG 3734 0.18593117459305772 No Hit CTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTCTTCTGCT 2608 0.12986301642707404 Illumina Single End Adapter 1 (95% over 21bp) ATGCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTCTTCT 2389 0.11895810822249997 No Hit CCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTCTTCTGC 2285 0.11377952167786205 No Hit ATGCCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTCTTC 2023 0.10073346711348574 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.14485104094568957 0.0 2 0.0 0.0 0.0 0.5428552933619484 0.0 3 0.0 0.0 0.0 0.8202084381084217 0.0 4 0.0 0.0 0.0 1.1042339924412554 0.0 5 0.0 0.0 0.0 2.044396420799992 0.0 6 0.0 0.0 0.0 2.2552744401898153 0.0 7 0.0 0.0 0.0 2.626240495550897 0.0 8 0.0 0.0 0.0 3.7082165246704877 0.0 9 0.0 0.0 0.0 3.848536302389619 0.0 10 0.0 0.0 0.0 4.126885329163907 0.0 11 0.0 0.0 0.0 4.349962903394464 0.0 12 0.0 0.0 0.0 4.946097885244514 0.0 13 9.95882027814985E-5 0.0 0.0 5.4795420934436105 0.0 14 1.4938230417224776E-4 0.0 0.0 5.7075492837118516 0.0 15 1.4938230417224776E-4 0.0 0.0 5.839204887788992 0.0 16 1.4938230417224776E-4 0.0 0.0 5.948204175733343 0.0 17 1.4938230417224776E-4 0.0 0.0 6.0803577208243915 0.0 18 1.4938230417224776E-4 0.0 0.0 6.3481006040024495 0.0 19 1.99176405562997E-4 0.0 0.0 6.6776379670064285 0.0 20 1.99176405562997E-4 0.0 0.0 7.080771011865934 0.0 21 1.99176405562997E-4 0.0 0.0 7.347518013016178 0.0 22 1.99176405562997E-4 0.0 0.0 7.632290478869873 0.0 23 2.987646083444955E-4 0.0 0.0 8.035622700134942 0.0 24 2.987646083444955E-4 0.0 0.0 8.399418404895757 0.0 25 2.987646083444955E-4 0.0 0.0 8.780741633346114 0.0 26 3.4855870973524476E-4 0.0 0.0 9.065713275605372 0.0 27 4.481469125167433E-4 0.0 0.0 9.327381278413759 0.0 28 4.481469125167433E-4 0.0 0.0 9.57864231403148 0.0 29 4.979410139074926E-4 0.0 0.0 9.81391944310277 0.0 30 4.979410139074926E-4 0.0 0.0 10.053030717981148 0.0 31 5.477351152982418E-4 0.0 0.0 10.318632454799404 0.0 32 5.97529216688991E-4 0.0 0.0 10.593944041388857 0.0 33 6.473233180797403E-4 0.0 0.0 10.8693054220797 0.0 34 6.473233180797403E-4 0.0 0.0 11.164883207935189 0.0 35 6.473233180797403E-4 0.0 0.0 11.44143964705941 0.0 36 6.473233180797403E-4 0.0 0.0 11.722328173004627 0.0 37 6.473233180797403E-4 0.0 0.0 12.026171779690978 0.0 38 6.971174194704895E-4 0.0 0.0 12.329866004073157 0.0 39 6.971174194704895E-4 0.0 0.0 12.640282432143088 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTAAGCG 30 2.1663145E-6 45.000004 17 TCGATAG 30 2.1663145E-6 45.000004 8 CATTACG 60 0.0 45.000004 26 CGTACGA 30 2.1663145E-6 45.000004 37 TACTCGA 30 2.1663145E-6 45.000004 41 AATCCGT 25 3.8918515E-5 45.0 42 ACGCATC 20 7.034548E-4 45.0 12 GACGTAA 20 7.034548E-4 45.0 21 CCCAACG 25 3.8918515E-5 45.0 34 TACGATC 35 1.2125383E-7 45.0 13 ACTAACG 20 7.034548E-4 45.0 38 AGTTACG 20 7.034548E-4 45.0 3 CTCGAAT 40 6.8193913E-9 45.0 43 TTACGCC 25 3.8918515E-5 45.0 1 CGTCGAA 25 3.8918515E-5 45.0 33 CGCAATA 25 3.8918515E-5 45.0 33 GCCGTAT 40 6.8193913E-9 45.0 24 ATACCCG 35 1.2125383E-7 45.0 22 TAGTCGA 25 3.8918515E-5 45.0 24 GCGTAAG 25 3.8918515E-5 45.0 3 >>END_MODULE