SRR1545646_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545646_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1571827
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ACTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCTGC	7193	0.45762033608024294	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4942	0.31441119156243025	No Hit
ATCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCTG	3929	0.24996389551776374	No Hit
CTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCTGCT	3602	0.22916007932170654	No Hit
ATGCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCT	2789	0.17743682988013312	No Hit
ATGCCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTC	2736	0.17406495753031345	No Hit
CCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCTGC	2549	0.1621679739564214	No Hit
ATTGCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTC	2377	0.15122529387776135	No Hit
ATGTCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTC	2062	0.13118492047788977	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	2053	0.13061233838075054	No Hit
ATATCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTC	1976	0.1257135804385597	No Hit
ATAGCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTC	1715	0.10910869962152323	No Hit
ATACCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTC	1670	0.1062457891358273	No Hit
ATGGCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTC	1640	0.10433718214536332	No Hit
GGGACTGTCTAGGGCACTCAGTGCCTCAAGTGGCAGGCAGCATAGAGAACA	1611	0.10249219538791482	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CAACGAA	55	1.8189894E-12	45.000004	33
ACGATTT	55	1.8189894E-12	45.000004	17
CGTCGAT	125	0.0	45.000004	45
GCTACGA	250	0.0	45.000004	10
ATCGGAT	75	0.0	45.000004	1
TGATCGA	35	1.2123019E-7	45.0	35
CGGACAA	35	1.2123019E-7	45.0	26
GCCCCTA	25	3.8914626E-5	45.0	11
CTTCGTC	25	3.8914626E-5	45.0	42
CTAGATT	20	7.034079E-4	45.0	23
CGGAATA	25	3.8914626E-5	45.0	32
AGACTCG	35	1.2123019E-7	45.0	40
GATACCG	25	3.8914626E-5	45.0	44
CAAACGA	50	2.1827873E-11	45.0	32
ACACGCG	25	3.8914626E-5	45.0	38
ACACGAG	155	0.0	45.0	28
CGTATAT	25	3.8914626E-5	45.0	38
CGAGTTA	25	3.8914626E-5	45.0	8
GTCGAAC	35	1.2123019E-7	45.0	29
TACCAGA	35	1.2123019E-7	45.0	17