##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545646_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1571827 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.937079589547704 31.0 31.0 34.0 31.0 34.0 2 32.59243860806565 34.0 31.0 34.0 31.0 34.0 3 32.54757425594547 34.0 31.0 34.0 31.0 34.0 4 36.00434271710564 37.0 35.0 37.0 35.0 37.0 5 35.77440392613182 37.0 35.0 37.0 35.0 37.0 6 35.78270636654034 37.0 35.0 37.0 35.0 37.0 7 35.76077201880359 37.0 35.0 37.0 33.0 37.0 8 35.7346864508626 37.0 35.0 37.0 33.0 37.0 9 37.91405161000543 39.0 38.0 39.0 35.0 39.0 10 37.84781658541303 39.0 38.0 39.0 35.0 39.0 11 37.70049057561678 39.0 38.0 39.0 35.0 39.0 12 37.25014330457487 39.0 37.0 39.0 34.0 39.0 13 36.97994308533954 39.0 37.0 39.0 33.0 39.0 14 37.56633904367338 40.0 35.0 41.0 33.0 41.0 15 37.384718547270154 40.0 35.0 41.0 32.0 41.0 16 37.45523839455615 40.0 35.0 41.0 32.0 41.0 17 37.5686115583967 40.0 35.0 41.0 33.0 41.0 18 37.63486757766599 39.0 35.0 41.0 33.0 41.0 19 37.59793539619818 39.0 35.0 41.0 33.0 41.0 20 37.57300580789107 39.0 35.0 41.0 33.0 41.0 21 37.55827645154333 39.0 35.0 41.0 33.0 41.0 22 37.48380069816844 39.0 35.0 41.0 33.0 41.0 23 37.3812995959479 39.0 35.0 41.0 32.0 41.0 24 37.34144088376138 39.0 35.0 41.0 32.0 41.0 25 37.28985378161846 39.0 35.0 41.0 32.0 41.0 26 37.18387265265198 39.0 35.0 41.0 32.0 41.0 27 37.08898371131174 39.0 35.0 41.0 32.0 41.0 28 36.981913403956035 39.0 35.0 41.0 32.0 41.0 29 36.93688936505099 39.0 35.0 41.0 31.0 41.0 30 36.82369497406521 39.0 35.0 41.0 31.0 41.0 31 36.76615047330272 39.0 35.0 41.0 31.0 41.0 32 36.668215395205706 38.0 35.0 41.0 31.0 41.0 33 36.54048759818988 38.0 35.0 41.0 31.0 41.0 34 36.454200748555664 38.0 35.0 41.0 30.0 41.0 35 36.35299749908864 38.0 35.0 41.0 30.0 41.0 36 36.33342346199677 38.0 35.0 41.0 30.0 41.0 37 36.1153046741149 38.0 35.0 41.0 30.0 41.0 38 36.0284000720181 38.0 35.0 40.0 30.0 41.0 39 36.01201595340963 38.0 35.0 40.0 30.0 41.0 40 35.971110052187676 38.0 35.0 40.0 30.0 41.0 41 35.9206948347369 38.0 35.0 40.0 30.0 41.0 42 35.7597318279938 38.0 35.0 40.0 29.0 41.0 43 35.68020653672446 38.0 35.0 40.0 29.0 41.0 44 35.57147510508472 37.0 35.0 40.0 29.0 41.0 45 35.54616443158185 37.0 34.0 40.0 29.0 41.0 46 35.48156126596629 37.0 34.0 40.0 29.0 41.0 47 35.39126252443812 37.0 34.0 40.0 28.0 41.0 48 35.3290018558022 37.0 34.0 40.0 28.0 41.0 49 35.285711468246824 37.0 34.0 40.0 28.0 41.0 50 35.19522250222194 36.0 34.0 40.0 28.0 41.0 51 35.05988954255144 36.0 34.0 40.0 28.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 3.0 9 3.0 10 6.0 11 17.0 12 24.0 13 21.0 14 48.0 15 51.0 16 112.0 17 208.0 18 402.0 19 764.0 20 1397.0 21 2385.0 22 3732.0 23 5478.0 24 7874.0 25 11242.0 26 15219.0 27 18626.0 28 21659.0 29 26154.0 30 31844.0 31 39101.0 32 49212.0 33 62931.0 34 102931.0 35 213113.0 36 112134.0 37 153047.0 38 229877.0 39 461953.0 40 258.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 2.222827321327347 90.93443489646124 3.222364802233325 3.6203729799780766 2 3.8376996959589063 2.585208168583438 90.4911927330425 3.085899402415151 3 27.797015829350176 16.652341510866016 42.44582896209316 13.104813697690648 4 26.260014619929546 15.822479191412286 44.074061585657965 13.843444603000203 5 23.924579486164827 14.47608420010599 46.32297320252165 15.27636311120753 6 22.802573056704077 14.709188733874656 47.19259816761005 15.295640041811218 7 23.11494840081001 17.53647188908194 43.59786414153721 15.750715568570842 8 24.48125652505015 19.43012812478727 43.365523050564725 12.723092299597857 9 80.32798774928793 4.408564046806678 10.237258934984576 5.026189268920817 10 81.1353921264872 4.416007614069487 9.867689001397736 4.580911258045574 11 74.43325505923998 7.320462111924531 11.289410348594343 6.956872480241145 12 43.331931567532564 23.41580848274015 16.593301934627664 16.658958015099625 13 35.417256479243584 22.537340305262603 24.937413595771034 17.10798961972278 14 30.664888693221325 24.545767441327833 26.456092178083214 18.33325168736763 15 20.659398267112092 30.663743529027048 30.512200133984212 18.164658069876648 16 17.186815088428943 34.74790800768787 29.75766417042079 18.3076127334624 17 15.58574830436174 24.976985380706658 40.139531895049515 19.297734419882087 18 19.772786699808567 20.833463224642408 39.32875564550043 20.0649944300486 19 18.666685328601684 21.542001759735648 29.706831604241437 30.084481307421235 20 20.767361802539337 22.72648325801758 34.05578349271262 22.45037144673046 21 26.149506275181682 24.725303738897473 27.58751440203025 21.537675583890596 22 27.383420694516637 21.94910763080161 27.24485582700895 23.422615847672805 23 23.71138808533 26.32497087783834 28.26863261669382 21.69500842013784 24 27.769341027988446 21.939500975616273 24.73249282522822 25.558665171167057 25 25.074387957453332 26.972052267838638 23.614685331146493 24.338874443561537 26 24.101761835112896 20.38233215232974 33.72018676355604 21.795719249001323 27 23.945065201195806 24.052010812894803 29.653326988275424 22.349596997633963 28 21.69418135710864 28.798907258877726 26.06323723921271 23.443674144800923 29 21.833000705548383 27.905551946874564 27.401806941858105 22.85964040571895 30 21.04468239825375 24.810872952303274 32.830394184601744 21.314050464841234 31 20.443343955791573 23.421597923944557 31.697126973897255 24.43793114636662 32 22.201679955873008 27.405878636771096 29.628069755768287 20.76437165158761 33 25.847819130222344 25.781781328352295 27.40721466166442 20.96318487976094 34 26.10993449024606 24.272518540526406 27.613598697566587 22.00394827166094 35 25.28039027195741 26.151033160774055 26.536699013313807 22.03187755395473 36 23.464541581229994 23.995770526909133 27.62256915042177 24.917118741439104 37 21.997013666262255 23.719022513291858 31.61047621653019 22.6734876039157 38 24.933914482955185 27.037135766213456 25.447647864555066 22.58130188627629 39 22.935157622308306 27.539353885637542 28.73477806399814 20.790710428056013 40 22.532950509184534 27.31222965377233 28.51560636125986 21.639213475783276 41 22.080737892910605 27.62816773092713 25.852463407232474 24.438630968929786 42 24.687322459787243 23.309499073371306 28.153479994935832 23.849698471905622 43 20.956377514828286 24.454599647416668 28.634194475600687 25.95482836215436 44 21.463430771961544 24.34460026453293 26.496554646281044 27.695414317224476 45 20.739623380944593 23.69331993915361 27.94130651782925 27.625750162072542 46 21.976527951231276 25.402413878881074 28.910688008285902 23.710370161601755 47 19.245438588343376 28.538636885611457 27.77563943105698 24.44028509498819 48 21.229371934697646 26.328469990654185 27.506462225168548 24.935695849479618 49 22.602551044103457 24.431251021899993 29.101930428730387 23.864267505266167 50 20.939390912613156 21.98976095969849 33.325614078394125 23.74523404929423 51 20.370498788988865 22.746968973048563 30.278713878817452 26.60381835914512 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1010.0 1 1267.0 2 1524.0 3 4649.0 4 7774.0 5 5283.5 6 2793.0 7 2961.0 8 3129.0 9 3353.5 10 3578.0 11 3738.5 12 3899.0 13 3700.5 14 3502.0 15 4177.0 16 4852.0 17 5041.5 18 5231.0 19 5024.0 20 4817.0 21 4884.0 22 4951.0 23 5552.0 24 6153.0 25 8883.5 26 13536.5 27 15459.0 28 18658.5 29 21858.0 30 24998.5 31 28139.0 32 32056.0 33 35973.0 34 43715.5 35 51458.0 36 54183.0 37 56908.0 38 70266.5 39 83625.0 40 98262.0 41 112899.0 42 129948.0 43 146997.0 44 159378.5 45 171760.0 46 164938.0 47 158116.0 48 136045.0 49 113974.0 50 101759.5 51 89545.0 52 85345.0 53 81145.0 54 75669.0 55 70193.0 56 70027.0 57 69861.0 58 65020.0 59 60179.0 60 54183.5 61 48188.0 62 40128.0 63 32068.0 64 27250.5 65 22433.0 66 19116.5 67 15800.0 68 11945.0 69 8090.0 70 6486.0 71 4882.0 72 4676.5 73 4471.0 74 2863.0 75 905.0 76 555.0 77 750.5 78 946.0 79 503.0 80 60.0 81 64.0 82 68.0 83 42.0 84 16.0 85 16.0 86 16.0 87 17.0 88 18.0 89 29.0 90 40.0 91 20.5 92 1.0 93 0.5 94 0.0 95 1.5 96 3.0 97 2.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1571827.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 15.014111286680015 #Duplication Level Percentage of deduplicated Percentage of total 1 70.7261707853005 10.618905990512387 2 11.61726872538237 3.488459309803164 3 5.247227942644329 2.3634739283231694 4 2.8280875715949527 1.6984488611361304 5 1.7785002025774748 1.3351299982440579 6 1.171605450425423 1.0554368770060902 7 0.8030730627542809 0.8440199834869417 8 0.5577491762540463 0.6699286561865887 9 0.41677897102012396 0.5631809267559714 >10 2.5429449341289616 7.55805277150954 >50 0.5619097182457199 6.168854325442249 >100 1.7163555727987228 58.09415352340955 >500 0.02169371355953776 2.029504023757676 >1k 0.010208806380958946 3.053069414555218 >5k 4.2536693253995606E-4 0.459381409871262 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source ACTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCTGC 7193 0.45762033608024294 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4942 0.31441119156243025 No Hit ATCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCTG 3929 0.24996389551776374 No Hit CTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCTGCT 3602 0.22916007932170654 No Hit ATGCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCT 2789 0.17743682988013312 No Hit ATGCCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTC 2736 0.17406495753031345 No Hit CCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCTGC 2549 0.1621679739564214 No Hit ATTGCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTC 2377 0.15122529387776135 No Hit ATGTCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTC 2062 0.13118492047788977 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 2053 0.13061233838075054 No Hit ATATCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTC 1976 0.1257135804385597 No Hit ATAGCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTC 1715 0.10910869962152323 No Hit ATACCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTC 1670 0.1062457891358273 No Hit ATGGCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTC 1640 0.10433718214536332 No Hit GGGACTGTCTAGGGCACTCAGTGCCTCAAGTGGCAGGCAGCATAGAGAACA 1611 0.10249219538791482 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.25359024879964526 0.0 2 0.0 0.0 0.0 0.9604746578344818 0.0 3 0.0 0.0 0.0 1.3594371390744655 0.0 4 0.0 0.0 0.0 1.7674973136356609 0.0 5 0.0 0.0 0.0 3.254365779440104 0.0 6 6.362023301546545E-5 0.0 0.0 3.6038317193940554 0.0 7 6.362023301546545E-5 0.0 0.0 4.1433949155982175 0.0 8 6.362023301546545E-5 0.0 0.0 5.819151853225578 0.0 9 6.362023301546545E-5 0.0 0.0 6.047230388586021 0.0 10 6.362023301546545E-5 0.0 0.0 6.446829072156159 0.0 11 1.9086069904639632E-4 0.0 0.0 6.784207167837173 0.0 12 1.9086069904639632E-4 0.0 0.0 7.5777423342390735 0.0 13 1.9086069904639632E-4 0.0 0.0 8.306830204596308 0.0 14 1.9086069904639632E-4 0.0 0.0 8.63803713767482 0.0 15 3.1810116507732724E-4 0.0 0.0 8.822472193186655 0.0 16 3.8172139809279263E-4 0.0 0.0 8.96396359141305 0.0 17 3.8172139809279263E-4 0.0 0.0 9.148398646924884 0.0 18 4.453416311082581E-4 0.0 0.0 9.52293095868693 0.0 19 4.453416311082581E-4 0.0 0.0 10.022095306926271 0.0 20 4.453416311082581E-4 0.0 0.0 10.573110145073217 0.0 21 4.453416311082581E-4 0.0 0.0 10.929001728561731 0.0 22 4.453416311082581E-4 0.0 0.0 11.2855295143804 0.0 23 5.089618641237236E-4 0.0 0.0 11.823883926157269 0.0 24 5.089618641237236E-4 0.0 0.0 12.255292726235139 0.0 25 5.72582097139189E-4 0.0 0.0 12.743005432531698 0.0 26 8.270630292010507E-4 0.0 0.0 13.104559216758588 0.0 27 0.0010815439612629125 0.0 0.0 13.437420275895503 0.0 28 0.001272404660309309 0.0 0.0 13.725874412387622 0.0 29 0.0013360248933247743 0.0 0.0 13.99123440429513 0.0 30 0.0013996451263402396 0.0 0.0 14.294448434846837 0.0 31 0.0013996451263402396 0.0 0.0 14.611022714331794 0.0 32 0.0013996451263402396 0.0 0.0 14.982055913277987 0.0 33 0.0013996451263402396 0.0 0.0 15.314344390317764 0.0 34 0.0015268855923711705 0.0 0.0 15.634672263550632 0.0 35 0.001590505825386636 0.0 0.0 15.948383632549893 0.0 36 0.001590505825386636 0.0 0.0 16.271447175802425 0.0 37 0.0016541260584021014 0.0 0.0 16.65749474974027 0.0 38 0.0016541260584021014 0.0 0.0 17.011859447636414 0.0 39 0.0016541260584021014 0.0 0.0 17.352609415667246 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CAACGAA 55 1.8189894E-12 45.000004 33 ACGATTT 55 1.8189894E-12 45.000004 17 CGTCGAT 125 0.0 45.000004 45 GCTACGA 250 0.0 45.000004 10 ATCGGAT 75 0.0 45.000004 1 TGATCGA 35 1.2123019E-7 45.0 35 CGGACAA 35 1.2123019E-7 45.0 26 GCCCCTA 25 3.8914626E-5 45.0 11 CTTCGTC 25 3.8914626E-5 45.0 42 CTAGATT 20 7.034079E-4 45.0 23 CGGAATA 25 3.8914626E-5 45.0 32 AGACTCG 35 1.2123019E-7 45.0 40 GATACCG 25 3.8914626E-5 45.0 44 CAAACGA 50 2.1827873E-11 45.0 32 ACACGCG 25 3.8914626E-5 45.0 38 ACACGAG 155 0.0 45.0 28 CGTATAT 25 3.8914626E-5 45.0 38 CGAGTTA 25 3.8914626E-5 45.0 8 GTCGAAC 35 1.2123019E-7 45.0 29 TACCAGA 35 1.2123019E-7 45.0 17 >>END_MODULE