FastQCFastQC Report
Thu 26 May 2016
SRR1545644_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1545644_1.fastq.gz
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences1690347
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACTGTCTCTTATACACATCTGACGCCACCTTTCTCGTATGCCGTCTTCTGC61430.36341650560506217TruSeq Adapter, Index 27 (100% over 24bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT38030.22498339098421805No Hit
ATCTGTCTCTTATACACATCTGACGCCACCTTTCTCGTATGCCGTCTTCTG25930.15340045564608923TruSeq Adapter, Index 27 (100% over 23bp)
ATGCTGTCTCTTATACACATCTGACGCCACCTTTCTCGTATGCCGTCTTCT25310.14973256970314378TruSeq Adapter, Index 27 (100% over 22bp)
ATGCCTGTCTCTTATACACATCTGACGCCACCTTTCTCGTATGCCGTCTTC22760.13464690977651333TruSeq Adapter, Index 27 (100% over 21bp)
CTGTCTCTTATACACATCTGACGCCACCTTTCTCGTATGCCGTCTTCTGCT20800.12305165744075033TruSeq Adapter, Index 27 (100% over 25bp)
ATTGCTGTCTCTTATACACATCTGACGCCACCTTTCTCGTATGCCGTCTTC20270.1199162065540389TruSeq Adapter, Index 27 (95% over 22bp)
ATGTCTGTCTCTTATACACATCTGACGCCACCTTTCTCGTATGCCGTCTTC19020.11252127521745535TruSeq Adapter, Index 27 (100% over 21bp)
CCTGTCTCTTATACACATCTGACGCCACCTTTCTCGTATGCCGTCTTCTGC17840.10554046003572047TruSeq Adapter, Index 27 (96% over 25bp)

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCTTACG207.034229E-445.00000438
GTCGAAC302.1661108E-645.00000442
AACCCGT302.1661108E-645.00000435
ATTAACG351.2123746E-745.0000041
CGTCTAC302.1661108E-645.00000428
CAATTCG351.2123746E-745.0000043
CCCACGT207.034229E-445.00000422
GTAATCG302.1661108E-645.00000443
CCGTAGA207.034229E-445.00000441
CTACGAC207.034229E-445.00000439
TACGACA207.034229E-445.00000420
GTCACGA207.034229E-445.00000436
GTCCGTT351.2123746E-745.00000413
GTCGTAC207.034229E-445.00000412
CGAATCG207.034229E-445.00000421
TTAACGA302.1661108E-645.0000042
ACTCGAT207.034229E-445.00000437
TCGTAGC800.045.0000042
TTACGAG406.8175723E-945.0000043
TACTAAT207.034229E-445.00000415