##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545644_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1690347 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.85560242956032 31.0 31.0 34.0 31.0 34.0 2 32.50308131998933 33.0 31.0 34.0 31.0 34.0 3 32.48644272448202 34.0 31.0 34.0 31.0 34.0 4 35.988537856428295 37.0 35.0 37.0 35.0 37.0 5 35.76559664968199 37.0 35.0 37.0 35.0 37.0 6 35.75876669109952 37.0 35.0 37.0 35.0 37.0 7 35.748149936078214 37.0 35.0 37.0 33.0 37.0 8 35.71832529060601 37.0 35.0 37.0 33.0 37.0 9 37.8655506827888 39.0 38.0 39.0 35.0 39.0 10 37.796412807547796 39.0 38.0 39.0 35.0 39.0 11 37.62960741196926 39.0 37.0 39.0 35.0 39.0 12 37.163197260680796 39.0 37.0 39.0 33.0 39.0 13 36.92378310488911 39.0 37.0 39.0 33.0 39.0 14 37.669218805369546 40.0 36.0 41.0 33.0 41.0 15 37.567561571677295 40.0 36.0 41.0 32.0 41.0 16 37.598601352266726 40.0 36.0 41.0 33.0 41.0 17 37.67453901477034 40.0 36.0 41.0 33.0 41.0 18 37.740261023328344 40.0 36.0 41.0 33.0 41.0 19 37.716659952069016 40.0 35.0 41.0 33.0 41.0 20 37.64606557115196 40.0 36.0 41.0 33.0 41.0 21 37.62749541957953 40.0 36.0 41.0 33.0 41.0 22 37.54117763985738 40.0 35.0 41.0 32.0 41.0 23 37.465869433909134 39.0 35.0 41.0 32.0 41.0 24 37.40711167588667 39.0 35.0 41.0 32.0 41.0 25 37.33243765924985 39.0 35.0 41.0 32.0 41.0 26 37.24400315438191 39.0 35.0 41.0 32.0 41.0 27 37.1502839357836 39.0 35.0 41.0 32.0 41.0 28 37.07778639533776 39.0 35.0 41.0 31.0 41.0 29 37.01281038745299 39.0 35.0 41.0 31.0 41.0 30 36.9581411390679 39.0 35.0 41.0 31.0 41.0 31 36.883777117952704 39.0 35.0 41.0 31.0 41.0 32 36.73637188103981 39.0 35.0 41.0 31.0 41.0 33 36.68210846648647 39.0 35.0 41.0 31.0 41.0 34 36.60974640118272 39.0 35.0 41.0 31.0 41.0 35 36.508660647784154 39.0 35.0 41.0 30.0 41.0 36 36.42167495786368 39.0 35.0 41.0 30.0 41.0 37 36.27672542974904 38.0 35.0 41.0 30.0 41.0 38 36.18459050124028 38.0 35.0 41.0 30.0 41.0 39 36.121773813305786 38.0 35.0 41.0 30.0 41.0 40 36.0743823605449 38.0 35.0 41.0 30.0 41.0 41 35.99271096408015 38.0 35.0 40.0 30.0 41.0 42 35.84284351082943 38.0 35.0 40.0 29.0 41.0 43 35.723130812785776 38.0 35.0 40.0 29.0 41.0 44 35.63934032479722 38.0 35.0 40.0 29.0 41.0 45 35.599674504702286 38.0 34.0 40.0 29.0 41.0 46 35.53006394545025 37.0 34.0 40.0 29.0 41.0 47 35.44951302898162 37.0 34.0 40.0 28.0 41.0 48 35.375483850357355 37.0 34.0 40.0 28.0 41.0 49 35.360076363018955 37.0 34.0 40.0 28.0 41.0 50 35.27684493183944 37.0 34.0 40.0 28.0 41.0 51 35.0882948885643 36.0 34.0 40.0 28.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 4.0 9 13.0 10 19.0 11 21.0 12 30.0 13 23.0 14 33.0 15 56.0 16 120.0 17 228.0 18 506.0 19 918.0 20 1746.0 21 2827.0 22 4182.0 23 5869.0 24 8648.0 25 12338.0 26 16398.0 27 20389.0 28 23979.0 29 28198.0 30 33918.0 31 41586.0 32 51751.0 33 66559.0 34 106025.0 35 197335.0 36 126257.0 37 170701.0 38 257910.0 39 511516.0 40 243.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 2.4967062975826857 90.10948639539691 3.6090222895062376 3.7847850175141557 2 3.6216232525037757 3.1037414211401564 89.91189383008341 3.3627414962726587 3 28.00643891461339 15.68186887071116 42.78157088455802 13.530121330117426 4 27.984135801702255 15.621940347159487 42.50866833851275 13.885255512625513 5 24.536618812587 14.662255738023022 45.780245121267996 15.020880328121978 6 22.653632656490057 15.025790562529467 46.47708429097694 15.843492490003532 7 22.189290128003304 17.900762387841077 44.067342385912475 15.842605098243142 8 26.648197086160412 19.20156038967147 42.2523895981121 11.89785292605601 9 81.15102993645684 4.905501651436066 9.523133415801608 4.420334996305493 10 81.78036817292545 5.092208877822127 9.234908572026928 3.892514377225505 11 75.39363219504635 7.049321825636985 10.735488038846462 6.821557940470211 12 42.13637791530378 24.11954468520369 16.69148405623224 17.052593343260288 13 34.48173659017941 23.944787667857547 24.150425918465263 17.42304982349778 14 29.330368261664617 24.20473429420113 27.591021251849472 18.87387619228478 15 22.13137302577518 27.44667219215936 31.645750842874275 18.776203939191184 16 18.758101147279227 33.11142623378514 28.655358929261272 19.47511368967437 17 16.674682772235524 25.029417036856927 38.49103172307225 19.804868467835302 18 20.404804457309652 21.194997240211624 37.72184054516617 20.67835775731255 19 22.16988582817611 20.584412549612594 29.017237289148323 28.228464333062973 20 22.285838351533737 23.53055319410748 31.758567915345193 22.425040539013587 21 26.939734859173885 24.269158936005446 27.21405723203579 21.57704897278488 22 28.132271066236697 22.78739217450618 25.823928459659466 23.256408299597656 23 26.169952086760883 24.389666737066413 27.949468363596353 21.49091281257635 24 28.717121395784417 21.942417740262798 24.21556047367789 25.124900390274895 25 26.59885810428273 25.207901099596707 24.555904793512813 23.637336002607746 26 26.208819845865968 20.87813922230169 30.0970747426416 22.81596618919074 27 26.37736512088938 23.374135606476067 27.04781917558939 23.20068009704516 28 23.715603955874148 27.070240607401914 24.34263497376574 24.871520462958195 29 21.451275980612262 27.26392864896971 25.98590703565599 25.298888334762033 30 21.769376346986743 26.79787049641287 29.784002929575998 21.64875022702439 31 21.533507617075074 24.130370864680447 28.502905024826262 25.833216493418217 32 21.85515755049111 25.83794924947363 27.223226946893153 25.083666253142106 33 23.742935622094162 26.560581939684575 25.781097017357972 23.91538542086329 34 25.554989596810596 24.396174276642608 26.555080110770156 23.493756015776643 35 25.67324933874524 25.394253369278612 25.43850463839673 23.49399265357941 36 22.321866457005573 24.921746836596274 27.74282440232686 25.013562304071296 37 22.796976005518392 24.08387153643601 29.462707952864115 23.656444505181483 38 24.878087161985082 26.13546212700706 25.506774644496073 23.479676066511786 39 23.104309351866807 28.06003737694095 26.107420547378734 22.728232723813512 40 23.32148369535959 25.7615152391787 27.437916593456848 23.47908447200486 41 22.773962979198945 27.19051177066011 26.020160357607047 24.0153648925339 42 24.788519753636386 24.37653333901264 28.092220118117762 22.742726789233217 43 22.124155572790677 24.355590893467436 27.96124109428419 25.559012439457696 44 22.167460290697708 25.435487506411402 25.314328951392824 27.082723251498063 45 22.49780666336557 23.96188474910773 26.537746391717203 27.0025621958095 46 23.978331076400288 25.352368478188207 26.904416667110365 23.76488377830114 47 21.592548748866356 25.937159648285235 26.015960036607865 26.45433156624054 48 19.99193065092552 27.195717802321063 26.98114647465875 25.831205072094665 49 22.75651094124461 24.919084661315104 28.311524201835482 24.012880195604808 50 22.525374967388352 22.752606417498892 30.369563172532033 24.352455442580727 51 21.31083144466787 24.044234704471922 27.741996170017163 26.90293768084305 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 687.0 1 1482.0 2 2277.0 3 4766.0 4 7255.0 5 5224.0 6 3193.0 7 3299.0 8 3405.0 9 3498.5 10 3592.0 11 3875.5 12 4159.0 13 4503.5 14 4848.0 15 4577.0 16 4306.0 17 4033.5 18 3761.0 19 4191.0 20 4621.0 21 4414.0 22 4207.0 23 5683.0 24 7159.0 25 10523.5 26 15349.5 27 16811.0 28 19972.0 29 23133.0 30 25292.0 31 27451.0 32 33357.0 33 39263.0 34 43180.0 35 47097.0 36 51277.5 37 55458.0 38 67122.0 39 78786.0 40 90726.0 41 102666.0 42 110958.5 43 119251.0 44 130445.5 45 141640.0 46 152042.5 47 162445.0 48 150628.5 49 138812.0 50 126798.0 51 114784.0 52 109903.0 53 105022.0 54 100249.0 55 95476.0 56 95354.5 57 95233.0 58 86630.5 59 78028.0 60 71678.5 61 65329.0 62 55304.0 63 45279.0 64 34940.5 65 24602.0 66 21730.5 67 18859.0 68 14742.5 69 10626.0 70 9344.0 71 8062.0 72 6250.0 73 4438.0 74 3686.0 75 1970.5 76 1007.0 77 622.5 78 238.0 79 194.5 80 151.0 81 102.0 82 53.0 83 42.0 84 31.0 85 23.0 86 15.0 87 7.5 88 0.0 89 3.0 90 6.0 91 4.0 92 2.0 93 1.0 94 0.0 95 0.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1690347.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 15.983619315604189 #Duplication Level Percentage of deduplicated Percentage of total 1 73.12625607543785 11.688222390851866 2 10.76555665752278 3.441451186688247 3 4.436079662760257 2.1271382574976125 4 2.419364326451447 1.5468079351901225 5 1.4996250492115955 1.198471795137117 6 0.9608160604286884 0.9214390885326422 7 0.6977038087653603 0.7806282452046837 8 0.4774828678603256 0.6105523511681907 9 0.36777633354674233 0.529055721782982 >10 2.4601876794734396 8.649631195143451 >50 0.9532731441026242 11.312770393091045 >100 1.8183973211247757 53.92735180545956 >500 0.012273902965252102 1.3546622397574368 >1k 0.004835173895402343 1.5466227598863158 >5k 3.719364534924879E-4 0.3651946346087653 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source ACTGTCTCTTATACACATCTGACGCCACCTTTCTCGTATGCCGTCTTCTGC 6143 0.36341650560506217 TruSeq Adapter, Index 27 (100% over 24bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3803 0.22498339098421805 No Hit ATCTGTCTCTTATACACATCTGACGCCACCTTTCTCGTATGCCGTCTTCTG 2593 0.15340045564608923 TruSeq Adapter, Index 27 (100% over 23bp) ATGCTGTCTCTTATACACATCTGACGCCACCTTTCTCGTATGCCGTCTTCT 2531 0.14973256970314378 TruSeq Adapter, Index 27 (100% over 22bp) ATGCCTGTCTCTTATACACATCTGACGCCACCTTTCTCGTATGCCGTCTTC 2276 0.13464690977651333 TruSeq Adapter, Index 27 (100% over 21bp) CTGTCTCTTATACACATCTGACGCCACCTTTCTCGTATGCCGTCTTCTGCT 2080 0.12305165744075033 TruSeq Adapter, Index 27 (100% over 25bp) ATTGCTGTCTCTTATACACATCTGACGCCACCTTTCTCGTATGCCGTCTTC 2027 0.1199162065540389 TruSeq Adapter, Index 27 (95% over 22bp) ATGTCTGTCTCTTATACACATCTGACGCCACCTTTCTCGTATGCCGTCTTC 1902 0.11252127521745535 TruSeq Adapter, Index 27 (100% over 21bp) CCTGTCTCTTATACACATCTGACGCCACCTTTCTCGTATGCCGTCTTCTGC 1784 0.10554046003572047 TruSeq Adapter, Index 27 (96% over 25bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.13932050638123414 0.0 2 0.0 0.0 0.0 0.6896808761751285 0.0 3 0.0 0.0 0.0 0.9268511140020362 0.0 4 0.0 0.0 0.0 1.2280910369291038 0.0 5 0.0 0.0 0.0 2.4082037593464536 0.0 6 0.0 0.0 0.0 2.688619555629702 0.0 7 0.0 0.0 0.0 3.1155141518279974 0.0 8 0.0 0.0 0.0 4.367860563541095 0.0 9 0.0 0.0 0.0 4.531673082509094 0.0 10 0.0 0.0 0.0 4.839124747758892 0.0 11 5.915945069266843E-5 0.0 0.0 5.0744610426143275 0.0 12 5.915945069266843E-5 0.0 0.0 5.727167262106538 0.0 13 5.915945069266843E-5 0.0 0.0 6.289714478743122 0.0 14 5.915945069266843E-5 0.0 0.0 6.529132775696351 0.0 15 5.915945069266843E-5 0.0 0.0 6.6686899198803555 0.0 16 5.915945069266843E-5 0.0 0.0 6.768136956494732 0.0 17 5.915945069266843E-5 0.0 0.0 6.902488069017782 5.915945069266843E-5 18 5.915945069266843E-5 0.0 0.0 7.190831231693847 5.915945069266843E-5 19 5.915945069266843E-5 0.0 0.0 7.5495741406941885 5.915945069266843E-5 20 1.1831890138533686E-4 0.0 0.0 7.968363892147589 5.915945069266843E-5 21 1.1831890138533686E-4 0.0 0.0 8.210444364381988 5.915945069266843E-5 22 1.1831890138533686E-4 0.0 0.0 8.489085377144455 5.915945069266843E-5 23 1.774783520780053E-4 0.0 0.0 8.897285586923868 5.915945069266843E-5 24 1.774783520780053E-4 0.0 0.0 9.255259423065205 5.915945069266843E-5 25 2.366378027706737E-4 0.0 0.0 9.665116097464011 5.915945069266843E-5 26 2.366378027706737E-4 0.0 0.0 9.950264649802673 5.915945069266843E-5 27 2.366378027706737E-4 0.0 0.0 10.221865687932715 5.915945069266843E-5 28 2.366378027706737E-4 0.0 0.0 10.47074949699677 5.915945069266843E-5 29 2.366378027706737E-4 0.0 0.0 10.720757335623988 5.915945069266843E-5 30 2.366378027706737E-4 0.0 0.0 10.957690935648124 5.915945069266843E-5 31 2.366378027706737E-4 0.0 0.0 11.203143496572006 5.915945069266843E-5 32 2.9579725346334215E-4 0.0 0.0 11.49633773420487 5.915945069266843E-5 33 2.9579725346334215E-4 0.0 0.0 11.77213909333409 5.915945069266843E-5 34 3.549567041560106E-4 0.0 0.0 12.055572021602664 5.915945069266843E-5 35 3.549567041560106E-4 0.0 0.0 12.331077583478422 5.915945069266843E-5 36 4.14116154848679E-4 0.0 0.0 12.5999572868766 5.915945069266843E-5 37 4.14116154848679E-4 0.0 0.0 12.902557877169599 5.915945069266843E-5 38 4.732756055413474E-4 0.0 0.0 13.190309445338738 5.915945069266843E-5 39 5.324350562340159E-4 0.0 0.0 13.489301309139485 5.915945069266843E-5 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CCTTACG 20 7.034229E-4 45.000004 38 GTCGAAC 30 2.1661108E-6 45.000004 42 AACCCGT 30 2.1661108E-6 45.000004 35 ATTAACG 35 1.2123746E-7 45.000004 1 CGTCTAC 30 2.1661108E-6 45.000004 28 CAATTCG 35 1.2123746E-7 45.000004 3 CCCACGT 20 7.034229E-4 45.000004 22 GTAATCG 30 2.1661108E-6 45.000004 43 CCGTAGA 20 7.034229E-4 45.000004 41 CTACGAC 20 7.034229E-4 45.000004 39 TACGACA 20 7.034229E-4 45.000004 20 GTCACGA 20 7.034229E-4 45.000004 36 GTCCGTT 35 1.2123746E-7 45.000004 13 GTCGTAC 20 7.034229E-4 45.000004 12 CGAATCG 20 7.034229E-4 45.000004 21 TTAACGA 30 2.1661108E-6 45.000004 2 ACTCGAT 20 7.034229E-4 45.000004 37 TCGTAGC 80 0.0 45.000004 2 TTACGAG 40 6.8175723E-9 45.000004 3 TACTAAT 20 7.034229E-4 45.000004 15 >>END_MODULE