SRR1545642_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545642_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1077941
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ACTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTCTGC	4761	0.44167537926472783	Illumina Single End Adapter 1 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2995	0.2778445202473976	No Hit
ATCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTCTG	2121	0.1967640158413123	No Hit
CTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTCTGCT	1816	0.1684693318094404	Illumina Single End Adapter 1 (95% over 22bp)
ATGCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTCT	1646	0.1526985243162659	No Hit
GGGACTGTCTAGGGCACTCAGTGCCTCAAGTGGCAGGCAGCATAGAGAACA	1588	0.14731789587741814	No Hit
ATGCCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTC	1475	0.13683494736724924	No Hit
CCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTCTGC	1407	0.13052662436997944	Illumina Single End Adapter 1 (95% over 21bp)
ATACCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTC	1396	0.12950616035571522	No Hit
ATTGCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTC	1394	0.1293206214440308	No Hit
ATTTTTTTGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTT	1355	0.12570261266618488	No Hit
ATGTCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTC	1339	0.12421830137270963	No Hit
ATATCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTC	1322	0.1226412206233922	No Hit
GCCCTGCTAGAGGACTTGCGTCTGTATCTATGCTCTGCCCCATGCAGCTCC	1264	0.11726059218454443	No Hit
ATGGCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTC	1106	0.10260301816147636	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATACGT	30	2.165376E-6	45.000004	29
CGAACTA	60	0.0	45.000004	33
CGTATAG	30	2.165376E-6	45.000004	3
CACGGAT	30	2.165376E-6	45.000004	22
CGCATAT	30	2.165376E-6	45.000004	30
GCACGGA	30	2.165376E-6	45.000004	1
CGACATC	30	2.165376E-6	45.000004	13
AGGCGAA	30	2.165376E-6	45.000004	19
ATCGTCC	30	2.165376E-6	45.000004	1
GCCTATT	30	2.165376E-6	45.000004	20
CGTCGAT	30	2.165376E-6	45.000004	30
CGAGACA	30	2.165376E-6	45.000004	27
CGGTAGA	30	2.165376E-6	45.000004	24
CGTCCGA	30	2.165376E-6	45.000004	34
GCTCGAT	60	0.0	45.000004	24
ATCGCCT	60	0.0	45.000004	1
ATCGACT	30	2.165376E-6	45.000004	1
ACGGTCG	30	2.165376E-6	45.000004	21
TCTGCGA	70	0.0	45.0	2
CTTGTAT	35	1.211829E-7	45.0	26