SRR1545640_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545640_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1886225
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ACTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTGC	6234	0.3305013982955374	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4728	0.25065938581028246	No Hit
ATCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTG	4443	0.2355498416148657	No Hit
CCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTGC	3021	0.16016116847141776	No Hit
CTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTGCT	2855	0.15136052167689432	Illumina Single End Adapter 2 (95% over 21bp)
ATGCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCT	2808	0.1488687722832642	No Hit
ATGCCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTC	2757	0.14616495911145277	No Hit
ATTGCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTC	2421	0.12835160174422458	No Hit
ATGTCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTC	2230	0.11822555633606807	No Hit
ATATCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTC	1995	0.10576680936791741	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCTCGA	30	2.1662454E-6	45.000004	1
GTACGAC	30	2.1662454E-6	45.000004	45
ACGCGAA	25	3.8917602E-5	45.0	14
CGAACTA	25	3.8917602E-5	45.0	44
ATCTACG	80	0.0	45.0	1
CAACGTT	40	6.8193913E-9	45.0	24
GTTTCGA	25	3.8917602E-5	45.0	35
CGTGAAT	25	3.8917602E-5	45.0	43
ATTACGC	35	1.2124838E-7	45.0	1
ATTACGA	35	1.2124838E-7	45.0	1
TAGCGAT	25	3.8917602E-5	45.0	2
CGCGATA	35	1.2124838E-7	45.0	43
TAAGTCG	20	7.034439E-4	45.0	9
CCTCGTA	25	3.8917602E-5	45.0	33
CGACACG	20	7.034439E-4	45.0	21
AACGGAT	35	1.2124838E-7	45.0	25
GCCGATT	25	3.8917602E-5	45.0	43
ACGCTAG	25	3.8917602E-5	45.0	37
ACTCGAT	40	6.8193913E-9	45.0	17
CGTAACG	20	7.034439E-4	45.0	3