Basic Statistics
Measure | Value |
---|---|
Filename | SRR1545639_1.fastq.gz |
File type | Conventional base calls |
Encoding | Illumina 1.5 |
Total Sequences | 1502354 |
Sequences flagged as poor quality | 0 |
Sequence length | 52 |
%GC | 50 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTGCTT | 7947 | 0.5289698699507573 | Illumina Single End Adapter 2 (95% over 22bp) |
GTCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTGC | 4438 | 0.2954030807652524 | No Hit |
TGCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTGC | 4287 | 0.2853521873007294 | No Hit |
GCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTGCT | 4182 | 0.2783631554214253 | Illumina Single End Adapter 2 (95% over 21bp) |
GCCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTGC | 4090 | 0.27223943225098746 | No Hit |
TTCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTGC | 3056 | 0.20341410879193586 | No Hit |
GGCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTGC | 2944 | 0.1959591414540115 | No Hit |
ATCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTGC | 2844 | 0.18930292061657905 | No Hit |
CCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTGCT | 2214 | 0.14736872934075457 | Illumina Single End Adapter 2 (95% over 21bp) |
TCCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTGC | 2198 | 0.14630373400676538 | No Hit |
AGCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTGC | 2123 | 0.14131156837869105 | No Hit |
ACCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTGC | 1913 | 0.1273335046200829 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTCGCAA | 20 | 6.3120754E-4 | 46.000004 | 37 |
TCGCAAT | 40 | 5.6134013E-9 | 46.000004 | 15 |
CGACGTA | 20 | 6.3120754E-4 | 46.000004 | 13 |
CGCGATC | 20 | 6.3120754E-4 | 46.000004 | 18 |
CACGACA | 20 | 6.3120754E-4 | 46.000004 | 28 |
TCAATCG | 20 | 6.3120754E-4 | 46.000004 | 39 |
TATTACG | 40 | 5.6134013E-9 | 46.000004 | 1 |
CATACCG | 20 | 6.3120754E-4 | 46.000004 | 26 |
TTAACGA | 20 | 6.3120754E-4 | 46.000004 | 13 |
TCGTAGT | 20 | 6.3120754E-4 | 46.000004 | 32 |
TCGTAAG | 40 | 5.6134013E-9 | 46.000004 | 1 |
CCGACGT | 20 | 6.3120754E-4 | 46.000004 | 12 |
TTAGTCG | 20 | 6.3120754E-4 | 46.000004 | 1 |
ACGTACG | 20 | 6.3120754E-4 | 46.000004 | 40 |
CACGTAA | 20 | 6.3120754E-4 | 46.000004 | 21 |
TCGAACG | 20 | 6.3120754E-4 | 46.000004 | 1 |
CCGCAAC | 20 | 6.3120754E-4 | 46.000004 | 10 |
ATCGATT | 20 | 6.3120754E-4 | 46.000004 | 27 |
TCGCATA | 25 | 3.41766E-5 | 46.0 | 11 |
CTCACGA | 30 | 1.8617866E-6 | 46.0 | 24 |