##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545639_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1502354 Sequences flagged as poor quality 0 Sequence length 52 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.55305740191726 33.0 31.0 34.0 31.0 34.0 2 32.96806145555575 34.0 31.0 34.0 31.0 34.0 3 33.0458493803724 34.0 33.0 34.0 31.0 34.0 4 36.423614540913796 37.0 37.0 37.0 35.0 37.0 5 36.402736638635105 37.0 37.0 37.0 35.0 37.0 6 36.4044645935645 37.0 37.0 37.0 35.0 37.0 7 36.461371287992044 37.0 37.0 37.0 35.0 37.0 8 36.49156190884439 37.0 37.0 37.0 35.0 37.0 9 38.28954360956206 39.0 39.0 39.0 37.0 39.0 10 38.08426243082523 39.0 39.0 39.0 35.0 39.0 11 37.925561485508744 39.0 38.0 39.0 35.0 39.0 12 37.56368405848422 39.0 37.0 39.0 35.0 39.0 13 37.492489786029125 39.0 37.0 39.0 35.0 39.0 14 38.730602774046595 41.0 38.0 41.0 35.0 41.0 15 38.82354425122175 41.0 38.0 41.0 35.0 41.0 16 38.89361894733199 41.0 38.0 41.0 35.0 41.0 17 38.867569827084694 41.0 38.0 41.0 35.0 41.0 18 38.835040875852165 41.0 38.0 41.0 35.0 41.0 19 38.82547255839835 40.0 38.0 41.0 35.0 41.0 20 38.726276230502265 40.0 38.0 41.0 35.0 41.0 21 38.67814975698138 40.0 38.0 41.0 35.0 41.0 22 38.80334927720098 40.0 38.0 41.0 35.0 41.0 23 38.80178706217043 40.0 38.0 41.0 35.0 41.0 24 38.74745898769531 41.0 38.0 41.0 35.0 41.0 25 38.67121929984544 40.0 38.0 41.0 35.0 41.0 26 38.54348043137636 40.0 37.0 41.0 35.0 41.0 27 38.430812578127394 40.0 37.0 41.0 35.0 41.0 28 38.38873993745815 40.0 37.0 41.0 35.0 41.0 29 38.29877379099733 40.0 36.0 41.0 35.0 41.0 30 38.219542131881035 40.0 36.0 41.0 34.0 41.0 31 38.17873151068257 40.0 36.0 41.0 34.0 41.0 32 38.07874043001849 40.0 36.0 41.0 34.0 41.0 33 38.027132087377545 40.0 36.0 41.0 34.0 41.0 34 37.87583552212062 40.0 35.0 41.0 34.0 41.0 35 37.743372068101124 40.0 35.0 41.0 34.0 41.0 36 37.67577947674117 40.0 35.0 41.0 33.0 41.0 37 37.593675658333524 40.0 35.0 41.0 33.0 41.0 38 37.46870378086656 40.0 35.0 41.0 33.0 41.0 39 37.390669575878924 40.0 35.0 41.0 33.0 41.0 40 37.26812855026179 39.0 35.0 41.0 33.0 41.0 41 37.13721998942992 39.0 35.0 41.0 33.0 41.0 42 37.031347472033886 39.0 35.0 41.0 33.0 41.0 43 36.9240318859603 39.0 35.0 41.0 33.0 41.0 44 36.83544357721283 39.0 35.0 41.0 32.0 41.0 45 36.76450290677164 39.0 35.0 41.0 32.0 41.0 46 36.75470694656519 39.0 35.0 41.0 32.0 41.0 47 36.711952708882194 38.0 35.0 41.0 32.0 41.0 48 36.61834228151288 38.0 35.0 40.0 32.0 41.0 49 36.50975136352684 38.0 35.0 40.0 32.0 41.0 50 36.3991582543129 38.0 35.0 40.0 32.0 41.0 51 36.270211281761824 38.0 35.0 40.0 31.0 41.0 52 35.93064484136229 37.0 35.0 40.0 31.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 4.0 11 6.0 12 10.0 13 14.0 14 24.0 15 61.0 16 104.0 17 140.0 18 249.0 19 534.0 20 843.0 21 1303.0 22 1920.0 23 2892.0 24 3755.0 25 4896.0 26 6111.0 27 7823.0 28 9697.0 29 12318.0 30 15565.0 31 20150.0 32 26382.0 33 37216.0 34 87856.0 35 148140.0 36 91185.0 37 135613.0 38 235453.0 39 651349.0 40 741.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 27.6917424255535 13.33613782104617 46.30326807130676 12.668851682093567 2 26.72672352854254 13.279559943927996 47.06434036185879 12.929376165670675 3 27.001425762503377 14.311141049313278 42.93442158106544 15.753011607117894 4 23.8061735117023 14.640690542974557 45.90456044314456 15.64857550217858 5 24.40456776498748 15.860576135850804 43.144159099652946 16.590696999508772 6 25.214962651944884 19.385178193688038 42.93242471481422 12.467434439552862 7 84.69854641449352 3.21901495919071 7.1117060293379595 4.970732596977809 8 85.31863994770873 3.5565519178569103 7.367571158328863 3.7572369761054984 9 77.66618253753775 5.586832397690557 9.523654211989983 7.223330852781701 10 43.85597535600797 21.164452585742108 15.858446145182825 19.121125913067093 11 35.30373001303288 22.946189779506028 24.12813491360891 17.621945293852182 12 28.37240756838934 24.192899942357126 26.465599985090066 20.969092504163466 13 23.381306935648986 24.79169356889255 32.882929056667074 18.944070438791393 14 18.671231946665035 30.42205765085992 31.134472967090314 19.77223743538474 15 18.788248308987097 22.79349607349533 36.50704161602392 21.911214001493658 16 23.378444760688893 22.0917972728132 33.31964370581101 21.210114260686897 17 24.2940744990861 22.01158981172214 27.10366531456634 26.590670374625418 18 24.59653317393903 22.467607501294633 29.18626369018221 23.749595634584125 19 26.714143271159795 24.315507530182636 27.45072066903007 21.519628529627504 20 27.418238311343394 22.846546153569662 25.582985102046525 24.152230433040415 21 26.353109852937457 24.614438407991727 28.47704335995378 20.555408379117036 22 29.07364043361285 20.65591731376227 26.03966841370276 24.23077383892212 23 27.651538851695406 24.148236700537957 23.513566043688773 24.686658404077868 24 26.20041614692676 20.955380689238357 27.72575571403278 25.11844744980211 25 28.906702415010045 23.374317903769683 23.882720051332775 23.836259629887497 26 23.565085192970496 25.623654611363232 25.122840555554816 25.688419640111455 27 23.14554359358713 25.83046339278226 25.78580015096309 25.238192862667518 28 24.803608204191555 23.301365723391424 27.9997257637015 23.895300308715523 29 23.33810806241405 23.269482425580122 28.63805734201127 24.754352169994558 30 23.77748519989297 26.19296117958883 28.779768283640205 21.249785336877995 31 28.45893843927596 23.815891594124952 25.182080921007966 22.54308904559112 32 27.762498053055406 22.74563784567419 27.525336904617685 21.96652719665272 33 29.251228405555548 22.980469316818805 26.068489849928845 21.699812427696802 34 27.62990613397375 22.849474890738136 26.293802925275934 23.226816050012182 35 24.676474386196595 24.528573159188845 28.736303161571776 22.058649293042784 36 29.399994941272162 23.112062802774847 24.419011764204708 23.068930491748283 37 28.285344199835727 24.661364764895623 25.641293596582432 21.41199743868622 38 25.109128740629703 23.966588433884425 29.11504212722168 21.80924069826419 39 24.739109424276833 24.63520581700451 25.46903060130968 25.156654157408976 40 27.159577569600774 22.110700939991506 28.05696926290342 22.672752227504304 41 25.45132505388211 22.690990272598867 26.89292936285323 24.964755310665794 42 24.596067238480412 24.11548809401779 25.578991369544063 25.70945329795774 43 22.998574237496623 21.28686048694249 28.911761142846494 26.802804132714392 44 26.939123535465008 21.73568945801056 26.7654627338164 24.55972427270803 45 22.729995726706225 22.814729417966735 27.843903633897206 26.611371221429835 46 23.0131513611306 23.068198307456164 26.72911976804402 27.189530563369217 47 24.47725369653224 22.843617416401194 30.237280960412793 22.44184792665377 48 23.66133414627977 21.359213607445383 32.372263794019254 22.607188452255595 49 23.711655175810762 20.751234396154302 28.143633258206783 27.393477169828152 50 22.421280204266107 22.825312809098257 30.375530667206263 24.377876319429376 51 25.12783272118289 23.266354001786528 27.399134957539967 24.206678319490614 52 23.765304315760467 21.331989664220284 28.118938678899912 26.783767341119336 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 233.0 1 183.0 2 133.0 3 125.5 4 118.0 5 159.5 6 201.0 7 332.0 8 463.0 9 542.0 10 621.0 11 737.5 12 854.0 13 1081.0 14 1377.5 15 1447.0 16 1377.0 17 1307.0 18 1394.0 19 1481.0 20 2105.0 21 2729.0 22 2796.5 23 2864.0 24 4524.0 25 6184.0 26 7230.0 27 8276.0 28 10415.5 29 12555.0 30 13816.0 31 15077.0 32 19535.0 33 23993.0 34 27101.5 35 30210.0 36 32676.5 37 35143.0 38 37489.5 39 48512.0 40 57188.0 41 64190.5 42 71193.0 43 79116.5 44 87040.0 45 98733.5 46 110427.0 47 128798.5 48 147170.0 49 151787.0 50 156404.0 51 139376.0 52 122348.0 53 108316.5 54 94285.0 55 89307.5 56 84330.0 57 80105.5 58 75881.0 59 75753.5 60 75626.0 61 69917.5 62 64209.0 63 56330.0 64 43415.5 65 38380.0 66 33458.5 67 28537.0 68 24963.0 69 21389.0 70 18166.5 71 14944.0 72 11470.5 73 7997.0 74 6675.5 75 5354.0 76 4401.0 77 3448.0 78 2443.0 79 1438.0 80 943.5 81 449.0 82 390.5 83 332.0 84 237.0 85 142.0 86 171.5 87 201.0 88 136.0 89 46.0 90 21.0 91 21.5 92 22.0 93 18.0 94 14.0 95 14.5 96 15.0 97 13.5 98 12.0 99 7.5 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 1502354.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 17.64907383205426 #Duplication Level Percentage of deduplicated Percentage of total 1 69.3610175982072 12.241577206571735 2 12.263052520250497 4.328630386725202 3 5.153735367951002 2.728759680595097 4 2.7104696510836024 1.9134911596606736 5 1.6677709242369179 1.4717306088405369 6 1.0639533397129082 1.1266674627872295 7 0.7377456888370869 0.9114369692095833 8 0.5323307239065063 0.7516115399437456 9 0.4039246019036113 0.6416005609421964 >10 3.21935981598903 12.419410329268388 >50 1.2725195127576483 16.467983101426757 >100 1.6046941849983989 41.556880159522116 >500 0.004147470872881172 0.45909094234326464 >1k 0.004901556486132295 2.4523002474610798 >5k 3.770428066255611E-4 0.5288296447024097 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTGCTT 7947 0.5289698699507573 Illumina Single End Adapter 2 (95% over 22bp) GTCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTGC 4438 0.2954030807652524 No Hit TGCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTGC 4287 0.2853521873007294 No Hit GCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTGCT 4182 0.2783631554214253 Illumina Single End Adapter 2 (95% over 21bp) GCCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTGC 4090 0.27223943225098746 No Hit TTCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTGC 3056 0.20341410879193586 No Hit GGCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTGC 2944 0.1959591414540115 No Hit ATCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTGC 2844 0.18930292061657905 No Hit CCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTGCT 2214 0.14736872934075457 Illumina Single End Adapter 2 (95% over 21bp) TCCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTGC 2198 0.14630373400676538 No Hit AGCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTGC 2123 0.14131156837869105 No Hit ACCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTGC 1913 0.1273335046200829 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.5559941265507331 0.0 2 0.0 0.0 0.0 1.1157822989788027 0.0 3 0.0 0.0 0.0 3.3846217336260294 0.0 4 0.0 0.0 0.0 3.881042683681742 0.0 5 0.0 0.0 0.0 4.641382789941652 0.0 6 0.0 0.0 0.0 6.958280139035141 0.0 7 0.0 0.0 0.0 7.255014463967879 0.0 8 0.0 0.0 0.0 7.792703983215674 0.0 9 0.0 0.0 0.0 8.14694805618383 0.0 10 0.0 0.0 0.0 9.304198610979835 0.0 11 0.0 0.0 0.0 10.326660693817836 0.0 12 0.0 0.0 0.0 10.767968135339608 0.0 13 0.0 0.0 0.0 11.00672677677831 0.0 14 0.0 0.0 0.0 11.179988205176675 0.0 15 6.656220837432455E-5 0.0 0.0 11.407431271191744 0.0 16 6.656220837432455E-5 0.0 0.0 11.917963409422812 0.0 17 6.656220837432455E-5 0.0 0.0 12.554431245898105 0.0 18 6.656220837432455E-5 0.0 0.0 13.251870065244276 0.0 19 6.656220837432455E-5 0.0 0.0 13.72246487845075 0.0 20 6.656220837432455E-5 0.0 0.0 14.218220206422721 0.0 21 6.656220837432455E-5 0.0 0.0 14.914860279268401 0.0 22 6.656220837432455E-5 0.0 0.0 15.533223195065876 0.0 23 6.656220837432455E-5 0.0 0.0 16.13660961397913 0.0 24 6.656220837432455E-5 0.0 0.0 16.62497653682155 0.0 25 6.656220837432455E-5 0.0 0.0 17.08139359964429 0.0 26 6.656220837432455E-5 0.0 0.0 17.485426204476443 0.0 27 6.656220837432455E-5 0.0 0.0 17.90270468877508 0.0 28 6.656220837432455E-5 0.0 0.0 18.28284146080085 0.0 29 6.656220837432455E-5 0.0 0.0 18.73812696608123 0.0 30 6.656220837432455E-5 0.0 0.0 19.1747750530168 0.0 31 6.656220837432455E-5 0.0 0.0 19.598310384902625 0.0 32 6.656220837432455E-5 0.0 0.0 20.019715726120474 0.0 33 6.656220837432455E-5 0.0 0.0 20.437127334835864 0.0 34 6.656220837432455E-5 0.0 0.0 20.869448878227104 0.0 35 6.656220837432455E-5 0.0 0.0 21.360544851612868 0.0 36 6.656220837432455E-5 0.0 0.0 21.7713668016992 0.0 37 6.656220837432455E-5 0.0 0.0 22.20774863980127 0.0 38 6.656220837432455E-5 0.0 0.0 22.656444486452592 0.0 39 6.656220837432455E-5 0.0 0.0 23.344298347792865 0.0 40 6.656220837432455E-5 0.0 0.0 23.762708389633868 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTCGCAA 20 6.3120754E-4 46.000004 37 TCGCAAT 40 5.6134013E-9 46.000004 15 CGACGTA 20 6.3120754E-4 46.000004 13 CGCGATC 20 6.3120754E-4 46.000004 18 CACGACA 20 6.3120754E-4 46.000004 28 TCAATCG 20 6.3120754E-4 46.000004 39 TATTACG 40 5.6134013E-9 46.000004 1 CATACCG 20 6.3120754E-4 46.000004 26 TTAACGA 20 6.3120754E-4 46.000004 13 TCGTAGT 20 6.3120754E-4 46.000004 32 TCGTAAG 40 5.6134013E-9 46.000004 1 CCGACGT 20 6.3120754E-4 46.000004 12 TTAGTCG 20 6.3120754E-4 46.000004 1 ACGTACG 20 6.3120754E-4 46.000004 40 CACGTAA 20 6.3120754E-4 46.000004 21 TCGAACG 20 6.3120754E-4 46.000004 1 CCGCAAC 20 6.3120754E-4 46.000004 10 ATCGATT 20 6.3120754E-4 46.000004 27 TCGCATA 25 3.41766E-5 46.0 11 CTCACGA 30 1.8617866E-6 46.0 24 >>END_MODULE