SRR1545638_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545638_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1726334
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ACTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTCTGC	6439	0.3729869191014022	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4818	0.2790885193711066	No Hit
ATCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTCTG	4359	0.25250038520935114	No Hit
CTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTCTGCT	3154	0.1826992922574658	Illumina Single End Adapter 2 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTCTGC	2590	0.15002890518289047	No Hit
ATATCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTC	2511	0.1454527339437212	No Hit
ATGTCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTC	2499	0.14475761932511322	No Hit
ATGCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTCT	2435	0.14105034135920397	No Hit
ATTGCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTC	2225	0.1288858355335642	No Hit
ATGCCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTC	1986	0.1150414693796218	No Hit
ATTTCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTC	1881	0.10895921646680191	No Hit
ATGGCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTC	1808	0.10473060253693665	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTGTCGT	25	3.8916216E-5	45.000004	20
GTACCGT	65	0.0	45.000004	20
TCCGCTA	50	2.1827873E-11	45.000004	2
TCCGCGC	25	3.8916216E-5	45.000004	2
CAAGTCG	25	3.8916216E-5	45.000004	32
TCCGATA	25	3.8916216E-5	45.000004	2
CTATCGC	25	3.8916216E-5	45.000004	26
CGACCCG	50	2.1827873E-11	45.000004	34
CGACCCA	25	3.8916216E-5	45.000004	19
TCCTCCG	25	3.8916216E-5	45.000004	39
TAACGAA	25	3.8916216E-5	45.000004	39
TGACGGA	50	2.1827873E-11	45.000004	19
CCGTCGT	25	3.8916216E-5	45.000004	44
TCGGACA	25	3.8916216E-5	45.000004	38
TGATTCG	50	2.1827873E-11	45.000004	17
GTCCGCT	25	3.8916216E-5	45.000004	16
CGTACGA	65	0.0	45.000004	24
ACGTCAT	25	3.8916216E-5	45.000004	41
TCATCGG	25	3.8916216E-5	45.000004	17
ACGTCAC	25	3.8916216E-5	45.000004	28