##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545638_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1726334 Sequences flagged as poor quality 0 Sequence length 51 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.993674456970666 31.0 31.0 34.0 31.0 34.0 2 32.678398849817015 34.0 31.0 34.0 31.0 34.0 3 32.60626970215497 34.0 31.0 34.0 31.0 34.0 4 36.033632541559165 37.0 35.0 37.0 35.0 37.0 5 35.784676661642536 37.0 35.0 37.0 35.0 37.0 6 35.77976046350243 37.0 35.0 37.0 35.0 37.0 7 35.77900916045215 37.0 35.0 37.0 35.0 37.0 8 35.74526424202964 37.0 35.0 37.0 33.0 37.0 9 37.9894394711568 39.0 39.0 39.0 35.0 39.0 10 37.99786078476124 39.0 39.0 39.0 35.0 39.0 11 37.77192536322635 39.0 38.0 39.0 35.0 39.0 12 37.21942856944253 39.0 37.0 39.0 33.0 39.0 13 36.90537230918235 39.0 37.0 39.0 33.0 39.0 14 37.7480991511492 40.0 36.0 41.0 33.0 41.0 15 37.64169911500324 40.0 36.0 41.0 33.0 41.0 16 37.72357434888034 40.0 36.0 41.0 33.0 41.0 17 37.81835670270063 40.0 36.0 41.0 33.0 41.0 18 37.86936826824937 40.0 36.0 41.0 33.0 41.0 19 37.841649993570186 40.0 36.0 41.0 33.0 41.0 20 37.77624318353227 40.0 36.0 41.0 33.0 41.0 21 37.79034821766819 40.0 36.0 41.0 33.0 41.0 22 37.72524957511119 40.0 35.0 41.0 33.0 41.0 23 37.6851321934226 40.0 35.0 41.0 33.0 41.0 24 37.64423512483679 40.0 35.0 41.0 33.0 41.0 25 37.59914303952769 40.0 35.0 41.0 33.0 41.0 26 37.496634486721575 40.0 35.0 41.0 32.0 41.0 27 37.389897319985586 39.0 35.0 41.0 32.0 41.0 28 37.324396669474154 39.0 35.0 41.0 32.0 41.0 29 37.273948726028685 39.0 35.0 41.0 32.0 41.0 30 37.22684254611217 39.0 35.0 41.0 32.0 41.0 31 37.22507869276745 39.0 35.0 41.0 32.0 41.0 32 37.109155007084375 39.0 35.0 41.0 31.0 41.0 33 36.98258506175514 39.0 35.0 41.0 31.0 41.0 34 36.93643987779885 39.0 35.0 41.0 31.0 41.0 35 36.86632134917113 39.0 35.0 41.0 31.0 41.0 36 36.811140254435124 39.0 35.0 41.0 31.0 41.0 37 36.65327277340306 39.0 35.0 41.0 30.0 41.0 38 36.57061785262875 39.0 35.0 41.0 30.0 41.0 39 36.550900347209755 39.0 35.0 41.0 30.0 41.0 40 36.45492529255637 39.0 35.0 41.0 30.0 41.0 41 36.451372098330914 39.0 35.0 41.0 30.0 41.0 42 36.37353779743665 39.0 35.0 41.0 30.0 41.0 43 36.27567724438029 38.0 35.0 41.0 30.0 41.0 44 36.18554520735848 38.0 35.0 40.0 30.0 41.0 45 36.14323126347509 38.0 35.0 40.0 30.0 41.0 46 36.133862856202796 38.0 35.0 40.0 30.0 41.0 47 36.05384126130865 38.0 35.0 40.0 30.0 41.0 48 36.00206449041727 38.0 35.0 40.0 29.0 41.0 49 35.98303283142196 38.0 35.0 40.0 29.0 41.0 50 35.90425780874385 38.0 35.0 40.0 29.0 41.0 51 35.70824243744258 38.0 35.0 40.0 29.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 3.0 10 7.0 11 5.0 12 9.0 13 18.0 14 20.0 15 28.0 16 52.0 17 132.0 18 312.0 19 591.0 20 1170.0 21 1994.0 22 3093.0 23 4849.0 24 7213.0 25 10964.0 26 14989.0 27 18654.0 28 21707.0 29 26270.0 30 32485.0 31 40134.0 32 50029.0 33 64068.0 34 99486.0 35 193609.0 36 117169.0 37 157476.0 38 254305.0 39 605170.0 40 323.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 1.1646066172594645 93.46806585515897 2.41494403748058 2.952383490100989 2 3.054101929290624 1.85584017924689 93.13145660109805 1.9586012903644372 3 25.303272715476844 15.276707751802373 45.03369568113702 14.38632385158376 4 25.360330040420916 15.926581993982625 46.731628989523465 11.981458976072997 5 23.320747896988646 14.148073316055873 49.14078040518231 13.390398381773169 6 19.978520958285014 14.830849650183566 50.719849113786786 14.47078027774463 7 21.72320072477284 16.40024468034575 48.181116747975764 13.695437846905639 8 25.0431260694628 19.159675937564806 44.33151406390652 11.46568392906587 9 85.44204076383828 3.2000759991983014 7.929172454461303 3.4287107825021113 10 87.22246100696621 2.9715570683309256 7.209091635801647 2.5968902889012204 11 79.87608423398949 6.654621875025343 8.290805834792108 5.178488056193066 12 39.39961791866464 33.22277149149585 13.642551209673215 13.735059380166295 13 29.022773113429963 24.880643027363185 29.85615761492272 16.24042624428413 14 27.737506183623793 25.30657450991523 29.30116651818246 17.654752788278515 15 20.159945873741698 31.123293638426862 31.873611942995968 16.843148544835472 16 16.52183181238393 36.329991762891765 28.85866813722026 18.28950828750404 17 15.613664563172597 26.797711219265796 38.76497827187554 18.82364594568606 18 19.38970095010583 25.10029924684331 36.62663192638273 18.88336787666813 19 19.43876445693591 23.53785536286721 30.374539341749628 26.648840838447253 20 19.246623191109023 25.48881039242696 34.42821609259853 20.836350323865485 21 22.803061284780348 26.59392678357722 30.313311329093906 20.28970060254852 22 24.772668556606078 25.300318478347762 28.833759863386803 21.093253101659354 23 22.698794091989154 27.206844098534816 30.200702760879413 19.89365904859662 24 26.164288023059267 23.170487286932886 27.420244286447463 23.244980403560376 25 23.2136423195048 26.49041263162285 26.267454617704338 24.028490431168013 26 22.3590568221445 24.389139065789124 33.81234454051186 19.43945957155452 27 22.535210451743406 27.58197428771026 29.873419627951485 20.009395632594853 28 20.416269389353392 30.09064294626648 28.157471265699453 21.335616398680674 29 19.26898271134091 29.1074612444637 28.753068641410064 22.870487402785326 30 17.87626264674159 27.7265002021625 33.62611174894314 20.77112540215277 31 18.786920723336273 25.156082194986602 32.20610843556345 23.85088864611367 32 19.42584691027345 29.03667540580212 30.583595063295977 20.953882620628452 33 22.07504457422492 27.895355128266026 29.98753427783963 20.042066019669427 34 22.796052212376054 27.62709881170156 27.2883462875666 22.288502688355788 35 23.25251081192863 27.53169433029761 27.253069220672245 21.96272563710151 36 21.67680182398076 26.13677306940604 29.439436401067233 22.746988705545974 37 20.268325828026327 26.653880419432163 30.222830576238437 22.854963176303077 38 23.861720848920314 28.363572750116724 27.8989465537955 19.875759847167465 39 22.277960116640234 29.391125935073976 27.98432979944785 20.34658414883794 40 20.18207368910072 27.18697540568627 31.382976874695164 21.24797403051785 41 20.38047098649508 28.623429765039678 28.698096660321816 22.298002588143433 42 23.29572377071876 25.85218155930428 29.101494843987318 21.750599825989642 43 21.74654499071443 25.870891727788482 29.478420745927497 22.904142535569594 44 20.849152018091516 27.323217870933437 27.663186845650955 24.164443265324092 45 20.11256222723992 26.005859816234867 29.31101397527941 24.570563981245808 46 21.895183666660103 26.937660962478873 28.37405739561406 22.79309797524697 47 18.906248732863975 29.65353170359849 28.023951332708503 23.41626823082903 48 19.95691447888995 29.143085868667363 27.480371700957058 23.419627951485634 49 20.675141658566652 27.50597508940912 30.43043814232935 21.388445109694878 50 21.17330713523571 23.79168805109556 32.45327960869681 22.58172520497192 51 19.806943499925275 25.4782678207114 29.541212766475084 25.173575912888236 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1095.0 1 1117.0 2 1139.0 3 4457.5 4 7776.0 5 5305.0 6 2834.0 7 2869.0 8 2904.0 9 3154.5 10 3405.0 11 3509.0 12 3613.0 13 3877.5 14 4142.0 15 4197.5 16 4253.0 17 4301.0 18 4349.0 19 4602.5 20 4856.0 21 7003.0 22 9150.0 23 10252.5 24 11355.0 25 14845.0 26 24442.0 27 30549.0 28 35075.5 29 39602.0 30 43520.5 31 47439.0 32 56034.0 33 64629.0 34 70419.0 35 76209.0 36 84965.5 37 93722.0 38 100242.0 39 106762.0 40 121534.0 41 136306.0 42 144021.5 43 151737.0 44 157811.0 45 163885.0 46 165546.5 47 167208.0 48 169286.5 49 171365.0 50 149790.0 51 128215.0 52 102889.5 53 77564.0 54 69274.5 55 60985.0 56 54090.5 57 47196.0 58 41016.5 59 34837.0 60 27127.5 61 19418.0 62 16260.5 63 13103.0 64 10094.5 65 7086.0 66 5957.5 67 4829.0 68 3449.0 69 2069.0 70 1650.0 71 1231.0 72 934.5 73 638.0 74 471.5 75 190.0 76 75.0 77 64.0 78 53.0 79 60.5 80 68.0 81 44.5 82 21.0 83 15.0 84 9.0 85 7.0 86 5.0 87 4.0 88 3.0 89 3.5 90 4.0 91 2.0 92 0.0 93 0.0 94 0.0 95 0.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1726334.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 15.576326012041891 #Duplication Level Percentage of deduplicated Percentage of total 1 69.43801984846931 10.815892347903937 2 12.042293541895093 3.7514938028252924 3 5.381622848402451 2.514777358817102 4 3.0866339381276298 1.923136660004348 5 1.9112379752967386 1.4885032894908432 6 1.2133971533734724 1.134016178581728 7 0.8412639307895544 0.9172660873704962 8 0.6016122761124457 0.7496727156459213 9 0.41957287968702306 0.5881863563834671 >10 2.5842708488676123 8.245512087776309 >50 0.7254386777624209 8.260848726782587 >100 1.7359776796720592 55.66220410295488 >500 0.010448704864750101 1.0843962132430303 >1k 0.007836528648562574 2.4898216013221055 >5k 3.7316803088393213E-4 0.3742724708979348 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source ACTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTCTGC 6439 0.3729869191014022 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4818 0.2790885193711066 No Hit ATCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTCTG 4359 0.25250038520935114 No Hit CTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTCTGCT 3154 0.1826992922574658 Illumina Single End Adapter 2 (95% over 21bp) CCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTCTGC 2590 0.15002890518289047 No Hit ATATCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTC 2511 0.1454527339437212 No Hit ATGTCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTC 2499 0.14475761932511322 No Hit ATGCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTCT 2435 0.14105034135920397 No Hit ATTGCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTC 2225 0.1288858355335642 No Hit ATGCCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTC 1986 0.1150414693796218 No Hit ATTTCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTC 1881 0.10895921646680191 No Hit ATGGCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTC 1808 0.10473060253693665 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.20239420645135878 0.0 2 0.0 0.0 0.0 0.8029153107104419 0.0 3 0.0 0.0 0.0 1.174338221919976 0.0 4 0.0 0.0 0.0 1.5321484718484373 0.0 5 0.0 0.0 0.0 2.9230728236830186 0.0 6 0.0 0.0 0.0 3.2451425969713856 0.0 7 0.0 0.0 0.0 3.7289423715225443 0.0 8 0.0 0.0 0.0 5.299148368739769 0.0 9 0.0 0.0 0.0 5.481442177469713 0.0 10 5.792621821733222E-5 0.0 0.0 5.851996195405987 0.0 11 5.792621821733222E-5 0.0 0.0 6.14550834311321 0.0 12 5.792621821733222E-5 0.0 0.0 6.961399126704334 0.0 13 1.7377865465199665E-4 0.0 0.0 7.7533663821717 0.0 14 1.7377865465199665E-4 0.0 0.0 8.078332466370934 0.0 15 1.7377865465199665E-4 0.0 0.0 8.230446715409649 0.0 16 2.3170487286932888E-4 0.0 0.0 8.326198754122899 0.0 17 2.3170487286932888E-4 0.0 0.0 8.472752086212749 0.0 18 2.3170487286932888E-4 0.0 0.0 8.828071508757866 0.0 19 2.3170487286932888E-4 0.0 0.0 9.349581251368507 0.0 20 3.475573093039933E-4 0.0 0.0 9.909785707748327 0.0 21 4.6340974573865775E-4 0.0 0.0 10.279818389720646 0.0 22 5.2133596395599E-4 0.0 0.0 10.654543095368567 0.0 23 5.2133596395599E-4 0.0 0.0 11.215210961494126 0.0 24 5.2133596395599E-4 0.0 0.0 11.731391492028774 0.0 25 5.2133596395599E-4 0.0 0.0 12.277056467636042 0.0 26 5.792621821733222E-4 0.0 0.0 12.702292835569478 0.0 27 6.371884003906545E-4 0.0 0.0 13.074758418706924 0.0 28 6.371884003906545E-4 0.0 0.0 13.425385817576437 0.0 29 6.371884003906545E-4 0.0 0.0 13.747861074392326 0.0 30 7.530408368253189E-4 0.0 0.0 14.080473419396247 0.0 31 7.530408368253189E-4 0.0 0.0 14.447609790457697 0.0 32 8.688932732599832E-4 0.0 0.0 14.88159301734195 0.0 33 8.688932732599832E-4 0.0 0.0 15.258518919282132 0.0 34 9.268194914773155E-4 0.0 0.0 15.627914412854059 0.0 35 9.847457096946476E-4 0.0 0.0 15.985261253036782 0.0 36 9.847457096946476E-4 0.0 0.0 16.3422605359102 0.0 37 0.00104267192791198 0.0 0.0 16.795359414806175 0.0 38 0.0011005981461293122 0.0 0.0 17.18862051028364 0.0 39 0.0011005981461293122 0.0 0.0 17.588311415983235 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTGTCGT 25 3.8916216E-5 45.000004 20 GTACCGT 65 0.0 45.000004 20 TCCGCTA 50 2.1827873E-11 45.000004 2 TCCGCGC 25 3.8916216E-5 45.000004 2 CAAGTCG 25 3.8916216E-5 45.000004 32 TCCGATA 25 3.8916216E-5 45.000004 2 CTATCGC 25 3.8916216E-5 45.000004 26 CGACCCG 50 2.1827873E-11 45.000004 34 CGACCCA 25 3.8916216E-5 45.000004 19 TCCTCCG 25 3.8916216E-5 45.000004 39 TAACGAA 25 3.8916216E-5 45.000004 39 TGACGGA 50 2.1827873E-11 45.000004 19 CCGTCGT 25 3.8916216E-5 45.000004 44 TCGGACA 25 3.8916216E-5 45.000004 38 TGATTCG 50 2.1827873E-11 45.000004 17 GTCCGCT 25 3.8916216E-5 45.000004 16 CGTACGA 65 0.0 45.000004 24 ACGTCAT 25 3.8916216E-5 45.000004 41 TCATCGG 25 3.8916216E-5 45.000004 17 ACGTCAC 25 3.8916216E-5 45.000004 28 >>END_MODULE